View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4783_low_4 (Length: 351)
Name: NF4783_low_4
Description: NF4783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4783_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 346
Target Start/End: Complemental strand, 887461 - 887126
Alignment:
| Q |
5 |
tagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataattacttaattagaggatcataaaatcaaaggtagct |
104 |
Q |
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| T |
887461 |
tagcaagcatatatttccttttctctgaaaattaaggatatatagctagcatgttagtatataattacttaattagaggatcataaaatcaaaggtagct |
887362 |
T |
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| Q |
105 |
taataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtttttgttgtttgtgatgctcaatattataggcttc |
204 |
Q |
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| T |
887361 |
tcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt------gtttgtgatgctcaatattataggcttc |
887268 |
T |
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| Q |
205 |
aaataatctttgctcacttggtctatacactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttgtttaaacggtccttcattattca |
304 |
Q |
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| T |
887267 |
aaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttttttaaacgttcctttattattca |
887168 |
T |
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| Q |
305 |
attctgtgtttatctaaaatatcaattaatattcgatcaaca |
346 |
Q |
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| T |
887167 |
attctgtgtttatctaaaatatcaattaatatttgatcaaca |
887126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
63 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
121 |
Q |
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| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 31875053 - 31875097
Alignment:
| Q |
187 |
ctcaatattataggcttcaaataatctttgctcacttggtctata |
231 |
Q |
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| T |
31875053 |
ctcattattataggcttcaaatagtctttgctcacttcgtctata |
31875097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 31900128 - 31900074
Alignment:
| Q |
15 |
atatttcctttactctgaaaattaaggatatatagctagcatgttagaatataat |
69 |
Q |
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| T |
31900128 |
atatttcctttactctgaaaattaaggatatatagctagcatgttagtatataat |
31900074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 29146628 - 29146696
Alignment:
| Q |
267 |
gtcttcctcagcttgtttaaacggtccttcattattcaattctgtgtttatctaaaatatcaattaata |
335 |
Q |
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| T |
29146628 |
gtcttccttagcttgtgtaaacgtttctttcgaattcaattctttgtttatctgaaatatcaattaata |
29146696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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