View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4784-Insertion-2 (Length: 900)

Name: NF4784-Insertion-2
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4784-Insertion-2
NF4784-Insertion-2
[»] chr7 (16 HSPs)
chr7 (485-899)||(5849885-5850300)
chr7 (16-494)||(5850326-5850786)
chr7 (5-101)||(35300479-35300575)
chr7 (32-101)||(19377363-19377432)
chr7 (8-101)||(28694094-28694186)
chr7 (8-99)||(3012280-3012371)
chr7 (8-101)||(26722992-26723085)
chr7 (33-101)||(5991484-5991552)
chr7 (8-101)||(7873262-7873355)
chr7 (8-101)||(41759662-41759755)
chr7 (41-101)||(815060-815120)
chr7 (37-101)||(22206757-22206821)
chr7 (37-101)||(22227918-22227982)
chr7 (46-101)||(21932858-21932913)
chr7 (35-101)||(25688259-25688325)
chr7 (44-101)||(30852323-30852380)
[»] chr3 (15 HSPs)
chr3 (8-101)||(37516616-37516709)
chr3 (41-101)||(53068228-53068288)
chr3 (8-101)||(7500930-7501023)
chr3 (8-101)||(26371075-26371168)
chr3 (8-97)||(41218425-41218514)
chr3 (41-101)||(12909806-12909866)
chr3 (41-101)||(14461051-14461111)
chr3 (41-101)||(28311263-28311323)
chr3 (41-101)||(33179199-33179259)
chr3 (41-101)||(44047570-44047630)
chr3 (41-101)||(53651884-53651944)
chr3 (41-95)||(47511719-47511773)
chr3 (41-101)||(25391899-25391959)
chr3 (17-101)||(26278337-26278421)
chr3 (41-101)||(43700229-43700289)
[»] chr5 (23 HSPs)
chr5 (8-101)||(16667536-16667629)
chr5 (18-101)||(16567771-16567854)
chr5 (8-101)||(7162126-7162219)
chr5 (8-101)||(37654768-37654861)
chr5 (17-101)||(34846335-34846419)
chr5 (8-75)||(15675307-15675374)
chr5 (7-101)||(17192711-17192805)
chr5 (32-101)||(43228709-43228778)
chr5 (41-101)||(8214688-8214748)
chr5 (17-101)||(12267461-12267545)
chr5 (17-101)||(33006875-33006959)
chr5 (18-101)||(37551938-37552021)
chr5 (35-101)||(32953737-32953803)
chr5 (41-101)||(2476384-2476444)
chr5 (34-101)||(37779644-37779711)
chr5 (17-98)||(21068980-21069061)
chr5 (41-101)||(6900753-6900813)
chr5 (41-101)||(34443946-34444006)
chr5 (41-101)||(36234646-36234706)
chr5 (34-101)||(1672555-1672622)
chr5 (8-101)||(35468870-35468964)
chr5 (16-97)||(9738356-9738437)
chr5 (17-102)||(13942834-13942919)
[»] chr1 (15 HSPs)
chr1 (8-101)||(14727298-14727391)
chr1 (41-101)||(49898395-49898455)
chr1 (7-101)||(8239259-8239353)
chr1 (8-101)||(48940470-48940563)
chr1 (41-101)||(9527025-9527085)
chr1 (8-101)||(31844674-31844767)
chr1 (41-97)||(4642145-4642201)
chr1 (41-101)||(25007444-25007504)
chr1 (41-101)||(25011611-25011671)
chr1 (8-75)||(6331680-6331747)
chr1 (41-101)||(27460676-27460736)
chr1 (41-101)||(27584088-27584148)
chr1 (41-101)||(44238934-44238994)
chr1 (38-101)||(33469013-33469076)
chr1 (43-101)||(4773987-4774045)
[»] chr2 (8 HSPs)
chr2 (7-101)||(25562904-25562998)
chr2 (43-106)||(12000498-12000561)
chr2 (17-97)||(34756664-34756744)
chr2 (41-101)||(6799960-6800020)
chr2 (41-101)||(13203748-13203808)
chr2 (41-101)||(18299217-18299277)
chr2 (44-101)||(304200-304257)
chr2 (52-101)||(27702030-27702079)
[»] chr8 (9 HSPs)
chr8 (16-101)||(3384081-3384166)
chr8 (8-101)||(13243062-13243155)
chr8 (41-101)||(24965013-24965073)
chr8 (41-101)||(34282972-34283032)
chr8 (17-101)||(36406552-36406636)
chr8 (41-101)||(38214739-38214799)
chr8 (17-101)||(39431725-39431809)
chr8 (32-97)||(8968314-8968379)
chr8 (44-101)||(28928039-28928096)
[»] chr4 (21 HSPs)
chr4 (8-101)||(25237545-25237638)
chr4 (8-101)||(46645572-46645665)
chr4 (8-101)||(4728527-4728620)
chr4 (8-96)||(10058511-10058599)
chr4 (43-101)||(50383869-50383927)
chr4 (8-101)||(9694068-9694161)
chr4 (48-101)||(49745020-49745073)
chr4 (41-101)||(4552166-4552226)
chr4 (32-101)||(9003537-9003606)
chr4 (41-101)||(10715635-10715696)
chr4 (41-101)||(10929405-10929466)
chr4 (8-101)||(14044326-14044419)
chr4 (38-99)||(15034545-15034606)
chr4 (41-101)||(2017512-2017572)
chr4 (41-101)||(31364116-31364176)
chr4 (41-101)||(32005895-32005955)
chr4 (41-101)||(41972512-41972572)
chr4 (18-101)||(11827078-11827161)
chr4 (41-99)||(1585692-1585750)
chr4 (41-99)||(40969207-40969265)
chr4 (8-101)||(2576140-2576233)
[»] chr6 (9 HSPs)
chr6 (5-101)||(15528915-15529011)
chr6 (37-101)||(34188771-34188835)
chr6 (17-93)||(28614434-28614510)
chr6 (36-99)||(9046997-9047060)
chr6 (8-101)||(9696024-9696117)
chr6 (41-101)||(34249088-34249148)
chr6 (42-101)||(2960665-2960724)
chr6 (7-101)||(2836253-2836347)
chr6 (8-74)||(15122039-15122105)
[»] scaffold0638 (1 HSPs)
scaffold0638 (32-101)||(4079-4148)
[»] scaffold0021 (2 HSPs)
scaffold0021 (17-101)||(109362-109446)
scaffold0021 (12-73)||(112272-112333)
[»] scaffold0075 (1 HSPs)
scaffold0075 (42-101)||(6891-6950)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 485 - 899
Target Start/End: Complemental strand, 5850300 - 5849885
Alignment:
Q  485 atgtatgattgtatgtcatctgtttagaatattgatgtaaaatgaagttgttaaattcacttgacacctagggtaactgttttcttcttttcttaatatt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5850300 atgtatgattgtatgtcatctgtttagaatattgatgtaaaatgaagttgttaaattcacttaacacctagggtaactgttttcttcttttcttaatatt 5850201  T
Q  585 gtttccatttcattttatggttgggggcactcctcttatgccaaagtggaggaggtaggtagataatgactagccataatctcaatagtaataagatatg 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850200 gtttccatttcattttatggttgggggcactcctcttatgccaaagtggaggaggtaggtagataatgactagccataatctcaatagtaataagatatg 5850101  T
Q  685 attggttttggtatacatggctctcattttattagactaataaatatgtaaatcaaaatctagctgcaaacaaattaagaatgtcccataacatactctc 784  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850100 attggttttggtatacatggctctcattttattagactaataaatatgtaaatcaaaatctagctgcaaacaaattaagaatgtcccataacatactctc 5850001  T
Q  785 tataaaccttccacgtttctcaacattttctc-ttctcttgaaccacacattttttccctcatatatactcaagttgtaggtatcatcttatcataatcc 883  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5850000 tataaaccttccacgtttctcaacattttctcgttctcttgaaccacacattttttccctcttatatactcaagttgtaggtatcatcttatcataatcc 5849901  T
Q  884 aaaagggtcattgtaa 899  Q
    ||||||||||||||||    
T  5849900 aaaagggtcattgtaa 5849885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 5850786 - 5850326
Alignment:
Q  16 agaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttggacttgttacaaagaa 115  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||    
T  5850786 agaatttacacaacattctgcagataaatccgcaggaaaagttaaaacttctagtaatggc---------------------tggacttgttacaaagaa 5850708  T
Q  116 acttctagccaaaataattcgatgatttttattgataacttatgtgcctaatatacaccaatttgttgttacaaatgatagtgactaatgaatacatatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850707 acttctagccaaaataattcgatgatttttattgataacttatgtgcctaatatacaccaatttgttgttacaaatgatagtgactaatgaatacatatt 5850608  T
Q  216 ataaataatgaatactcatttgacccaagaatgcattttttgttgttgtnnnnnnncaaattagcctatcaaatttgacatagaggagaatcgaatctga 315  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||| |||| ||||||||||||    
T  5850607 ataaataataaatactcatttgacccaagaatgcattttttgttgttgtaaaaaaacaaactagcctatcaaatttgacataaaggaaaatcgaatctga 5850508  T
Q  316 gaccttaagagaagtatacttcaaagacgtnnnnnnncaccatcaaattaaaccaagtgggtttaaagaatgcacattatgac---tgaatacataatat 412  Q
     |||||||||||||||||||||||||||||       || ||||||| |||||||||||||||||||||||||| ||||||||   ||||||||||||||    
T  5850507 aaccttaagagaagtatacttcaaagacgtaaaaaaacatcatcaaactaaaccaagtgggtttaaagaatgcatattatgactaatgaatacataatat 5850408  T
Q  413 attctaaatatatacatattagtatattactttattaaaatttgtttacacttttacaatatgatgaagttaatgtatgatt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5850407 attctaaatatatacatattagtatattactttattaaaatttgtttacacttttacaatatgatgaagttaatgtaagatt 5850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 35300479 - 35300575
Alignment:
Q  5 acatttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||  |||||||||||| | ||||||||||||||||||||||||| ||||  ||||||||||||  || |||| ||||||||||||||||    
T  35300479 acatttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttgga 35300575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 19377432 - 19377363
Alignment:
Q  32 tccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  19377432 tccgcaggtaaatctgcaagaaaagttaaaactactagtaatggctggagttgttacaaagaaagttgga 19377363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 28694094 - 28694186
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||| ||||||||||||| | ||||||| |||||||| ||| |||||| ||| ||||||||||||| | ||||| ||||||||||||||||    
T  28694094 tttcctgcagaatttacacaaaaatccgcagctaaatccg-aggcaaagtttaaagttctagtaatggcggaacttgctacaaagaaagttgga 28694186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 3012371 - 3012280
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttg 99  Q
    |||||||  |||| ||||||| | || |||||||||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||    
T  3012371 tttcctgcggaatgtacacaaaaatcggcaggtaaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttg 3012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26722992 - 26723085
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||||| || | |||||||||||||||| |||||||| ||||| ||||||||||||  ||| ||| |||||| |||||||||    
T  26722992 tttcctgcggaatttacataaaaatccgcaggtaaatccgtaggaaaagctaaaatttctagtaatggttggatttgctacaaaaaaagttgga 26723085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 5991484 - 5991552
Alignment:
Q  33 ccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||||||  ||||| ||||||||||||| || |||| |||||||||| |||||    
T  5991484 ccgcaggtaaatccgcaggaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattgga 5991552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 7873262 - 7873355
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||||| || |  |||||||||||||||||| ||||| ||||| ||||||||||||  || |||| |||||||||| |||||    
T  7873262 tttcctgcggaatttacataaaaacccgcaggtaaatccgcagaaaaagctaaaagttctagtaatggttgggcttgctacaaagaaaattgga 7873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 41759662 - 41759755
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||| | | ||| || ||||||| ||| |||||| ||||| ||||||||||||| || |||| ||||||||||||||||    
T  41759662 tttcctgcggaatttacaccaaaatccacaagtaaatctgcaagaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttgga 41759755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 815060 - 815120
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||| |||||||| ||||| |||||||||||||  || ||| ||||||||||||||||    
T  815060 aaatccgtaggaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttgga 815120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 22206757 - 22206821
Alignment:
Q  37 aggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||| ||||| || |||||||| | || |||| |||||||||| |||||    
T  22206757 aggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattgga 22206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 22227982 - 22227918
Alignment:
Q  37 aggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||| ||||| || |||||||| | || |||| |||||||||| |||||    
T  22227982 aggtaaatccgcaggaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattgga 22227918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 21932858 - 21932913
Alignment:
Q  46 cgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||||| || |||||||||  || |||| ||||||||||||||||    
T  21932858 cgcaggaaaagttaaaagttttagtaatggttgggcttgctacaaagaaagttgga 21932913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 25688259 - 25688325
Alignment:
Q  35 gcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||| |||||||||| ||||| || |||||||||| |  |||| |||||||||| |||||    
T  25688259 gcaggtaaatctgcaggaaaagctaaaagttttagtaatggctgagcttgctacaaagaaaattgga 25688325  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 30852380 - 30852323
Alignment:
Q  44 tccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||||||| ||||||||||||| |  |||  |||||||||| |||||    
T  30852380 tccgcaggaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattgga 30852323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 37516709 - 37516616
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||  ||||||| ||||||||||||||||    
T  37516709 tttcctgcagaatttacacaaaattccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttgga 37516616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 53068288 - 53068228
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53068288 aaatccgcaggaaaagttaaaacttctagtaatggctggacttgttacaaagaaagttgga 53068228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 7501023 - 7500930
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||||||||   |||||| |||||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  7501023 tttcctgcggaatttacacaaacatccgcatgtaaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 7500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26371075 - 26371168
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | ||||||||||||||||||| ||| | ||||| ||||||||||||  ||| ||| || ||| |||||||||    
T  26371075 tttcctgcggaatttacacaaaaatccgcaggtaaatccgcagaaaatgctaaaatttctagtaatggttggatttgctaaaaataaagttgga 26371168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 41218425 - 41218514
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagt 97  Q
    |||||||  ||||||| |||| | | |||| |||||||||||||||||| ||||| ||||||||||||| || |||| ||||| ||||||    
T  41218425 tttcctgcggaatttagacaaaaatgcgcaagtaaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagt 41218514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 12909866 - 12909806
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  12909866 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 12909806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 14461111 - 14461051
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||||| ||||||||||||  || |||| |||||||||| |||||    
T  14461111 aaatccgcaggaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattgga 14461051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 28311323 - 28311263
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||  ||||| ||||||||||||  || |||||||||||||||||||||    
T  28311323 aaatccgcaggaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttgga 28311263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 33179199 - 33179259
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||| ||||||||||| ||||| ||||||||||||| ||||||| |||||| |||||||||    
T  33179199 aaattcgcaggaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttgga 33179259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 44047630 - 44047570
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  44047630 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 44047570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 53651944 - 53651884
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  53651944 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 53651884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 47511719 - 47511773
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaa 95  Q
    ||||||||||||||||  |||  ||||||||||||| ||||||||||||||||||    
T  47511719 aaatccgcaggaaaagcgaaaggttctagtaatggctggacttgttacaaagaaa 47511773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 25391899 - 25391959
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||| ||||||||||||    
T  25391899 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttgga 25391959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 26278421 - 26278337
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| || | |||| ||||||||||||| |||||| ||||| |||||||||||||  | |||| | |||||||| |||||    
T  26278421 gaatttacataaaaatccgtaggtaaatccgcatgaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattgga 26278337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 43700229 - 43700289
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||| |||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  43700229 aaatctgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 43700289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 16667536 - 16667629
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  16667536 tttcctgcggaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttgga 16667629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 16567854 - 16567771
Alignment:
Q  18 aatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||| |||| | |||||||||||||||| |||||| ||||| ||||||||||||| ||||||| |||||||||| |||||    
T  16567854 aatttacataacaattcgcaggtaaatccgcaagaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattgga 16567771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 7162126 - 7162219
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||| ||||||||| || | ||| ||||||||||||||||||||| ||||| || |||||||||| || |||| |||||||||| |||||    
T  7162126 tttcctgtggaatttacataaaaatcctcaggtaaatccgcaggaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattgga 7162219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 37654861 - 37654768
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||| | ||||||||| |||| | ||||||||||||||||||||||| ||||| |||||||||| || ||||||| || ||||||| |||||    
T  37654861 tttcctatggaatttacataacaattcgcaggtaaatccgcaggaaaagataaaagttctagtaatagctggacttgctagaaagaaaattgga 37654768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 34846419 - 34846335
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||| | |||| |||||||||||||||| ||| ||||| ||||||||||||   |||||| ||||||||||||||||    
T  34846419 gaatttacacaaaaatccggaggtaaatccgcaggataagctaaaaattctagtaatggtttgacttgctacaaagaaagttgga 34846335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 15675374 - 15675307
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatgg 75  Q
    |||||||  |||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||    
T  15675374 tttcctgcggaatttacacaaaactccgcaggtaaatccgcagaaaaagttaaaaattctagtaatgg 15675307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 17192711 - 17192805
Alignment:
Q  7 atttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||  ||||| |||||| | ||||| |||||||||||||||| || ||||| ||||||||||||| |  |||| ||||||||||||||||    
T  17192711 atttcctgcggaattgacacaaaaatccgccggtaaatccgcaggaagagctaaaagttctagtaatggctgagcttgctacaaagaaagttgga 17192805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 43228709 - 43228778
Alignment:
Q  32 tccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||| || |||| |||||||||| |||||    
T  43228709 tccgcaggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattgga 43228778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 8214688 - 8214748
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||| |||||||||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  8214688 aaatctgcaggaaaagataaaacttctagtaatggctagacttgttacaaaaaaagttgga 8214748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 12267461 - 12267545
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| || | ||||||||||||||| ||||||||| ||||| |||||||||| ||  | |||| ||||||||||||||||    
T  12267461 gaatttacataaaaatccgcaggtaaatccacaggaaaagctaaaagttctagtaattgctaggcttgctacaaagaaagttgga 12267545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 33006959 - 33006875
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||  | |||||||||  ||  ||| ||||||||||||||||    
T  33006959 gaatttacacaaaaatccgcaggtaaatccgcaggaaaagctaaaaaatttagtaatggttgggtttgctacaaagaaagttgga 33006875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 37552021 - 37551938
Alignment:
Q  18 aatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||| |||| | ||||||||| ||||||||||||| ||||| |||||||||| || ||||||| || ||||||| |||||    
T  37552021 aatttacataacaattcgcaggtaactccgcaggaaaagataaaagttctagtaatagctggacttgctagaaagaaaattgga 37551938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 32953737 - 32953803
Alignment:
Q  35 gcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||| |||||||| ||||| ||||||||||||| || |||| |||||||||| |||||    
T  32953737 gcaggtaaatccgtaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattgga 32953803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 2476444 - 2476384
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  ||||||| |||||||||| |||||    
T  2476444 aaatccgcaggaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattgga 2476384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 37779711 - 37779644
Alignment:
Q  34 cgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||||| ||||  ||||| ||||||||||||| | ||||| |||||||||| |||||    
T  37779711 cgcaggtaaatccgcagaaaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattgga 37779644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 21069061 - 21068980
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagtt 98  Q
    |||| ||||||| | | ||||||||||||||||||||| | ||||| ||||||||||||  || |||  |||||||||||||    
T  21069061 gaatatacacaaaaatgcgcaggtaaatccgcaggaaaggctaaaaattctagtaatggttgggcttactacaaagaaagtt 21068980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 6900813 - 6900753
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||| |||||||||| ||||| ||||||||||||| |  |||| ||||||||||||||||    
T  6900813 aaatctgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttgga 6900753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 34444006 - 34443946
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| || || ||||||||||||  || |||| ||||||||||||||||    
T  34444006 aaatccgcaggaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttgga 34443946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 36234646 - 36234706
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||||||||| ||||| ||||||| || |||| |||||||||| |||||    
T  36234646 aaatccgcatgaaaagttaaaagttctaataatggctgggcttgctacaaagaaaattgga 36234706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 1672555 - 1672622
Alignment:
Q  34 cgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||||||||| | ||||| ||||||||||||  ||  ||| |||||||||| |||||    
T  1672555 cgcaggtaaatccgcaggaaaggataaaagttctagtaatggttgggattgctacaaagaaaattgga 1672622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 35468964 - 35468870
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaag-ttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | |||||||  |||||||||| ||||| | |||| |||||| |||||  || |||| ||||||||||||||||    
T  35468964 tttcctgcggaatttacacaaaaatccgcagaaaaatccgcagaaaaagctaaaaaattctagcaatggttgggcttgctacaaagaaagttgga 35468870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 9738437 - 9738356
Alignment:
Q  16 agaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagt 97  Q
    ||||||||||||| | || |||||||||||||||||||| |  | || ||||||||||||  || |||| | ||||||||||    
T  9738437 agaatttacacaaaaatctgcaggtaaatccgcaggaaatgcgagaagttctagtaatggttgggcttgcttcaaagaaagt 9738356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 13942834 - 13942919
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttggac 102  Q
    |||| ||||||| | || ||||||||||| | |||||||| | ||| ||||||||| ||| ||  ||| |||||||||||||||||    
T  13942834 gaatctacacaaaaatctgcaggtaaatcggtaggaaaagctcaaagttctagtaaaggctgggtttgctacaaagaaagttggac 13942919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 14727391 - 14727298
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||  ||||||| ||||||||||||||||    
T  14727391 tttcctgcggaatttacacaaaactccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttgga 14727298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 49898455 - 49898395
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  49898455 aaatctgcaggaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttgga 49898395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 8239353 - 8239259
Alignment:
Q  7 atttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||  |||||||||||| | |||||||||||||| |||||||||| ||||| ||||||||||||  ||  ||  ||||||||||||||||    
T  8239353 atttcctgcggaatttacacaaaaatccgcaggtaaatctgcaggaaaagctaaaaattctagtaatggtagggattactacaaagaaagttgga 8239259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 48940470 - 48940563
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | ||||||  ||||||||||||||||| ||||| |||||||||||||  | |||| ||||||||| ||||||    
T  48940470 tttcctgcggaatttacacaaaaatccgcaaataaatccgcaggaaaagctaaaagttctagtaatggcttggcttgctacaaagaatgttgga 48940563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 9527085 - 9527025
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||| || |||| ||||||||||||||||    
T  9527085 aaatccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttgga 9527025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 31844674 - 31844767
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | || ||||||||||||| |||||||| ||||| ||||||||||||  ||  ||| || |||||||||||||    
T  31844674 tttcctgcggaatttacacaaaaatctgcaggtaaatccgtaggaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttgga 31844767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 4642145 - 4642201
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagt 97  Q
    |||||||||||||||| ||||| ||||||||||||| | ||||| ||||||||||||    
T  4642145 aaatccgcaggaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagt 4642201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 25007504 - 25007444
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  25007504 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 25007444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 25011611 - 25011671
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  25011611 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 25011671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 6331747 - 6331680
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatgg 75  Q
    |||||||  |||||||||||| | |||| ||||||| |||||||||||| ||||| ||||||||||||    
T  6331747 tttcctgcggaatttacacaaaaatccggaggtaaacccgcaggaaaagctaaaatttctagtaatgg 6331680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 27460736 - 27460676
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  27460736 aaatccgcaagaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 27460676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 27584088 - 27584148
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||   | |||| ||||||||||||||||    
T  27584088 aaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttgga 27584148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 44238934 - 44238994
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||| ||||| ||||||||||||| || |||  ||||||||||||||||    
T  44238934 aaatccgcaagaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttgga 44238994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 33469013 - 33469076
Alignment:
Q  38 ggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||||||| ||||| ||||||||||||  | | ||| || |||||||||||||    
T  33469013 ggtaaatccgcaggaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttgga 33469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 4774045 - 4773987
Alignment:
Q  43 atccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||| ||||| ||||||||||||| || |||| |||||| ||| |||||    
T  4774045 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattgga 4773987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 25562998 - 25562904
Alignment:
Q  7 atttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||  ||||||||| |||| ||||||| ||||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  25562998 atttcctgcggaatttacaaaacaatccgcagataaatccgcaggaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttgga 25562904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 12000561 - 12000498
Alignment:
Q  43 atccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttggacttgt 106  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  12000561 atccgcaggaaaagctaaaacttctactaatggctggacttgttacaaagaaagttggagttgt 12000498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 34756744 - 34756664
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagt 97  Q
    |||||||||| | | || ||||||||||||||||||||||| | |  ||||||||| ||||||||||| ||||||||||||    
T  34756744 gaatttacaccaaaatctgcaggtaaatccgcaggaaaagtgagaggttctagtaacggccggacttgctacaaagaaagt 34756664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 6799960 - 6800020
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||||| ||||||||||||  |  |||| ||||||||||||||||    
T  6799960 aaatccgcaggaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttgga 6800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 13203808 - 13203748
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  13203808 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 13203748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 18299217 - 18299277
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||||||||| ||||||||||||  || |||| ||||||||||||||||    
T  18299217 aaatccgcaagaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttgga 18299277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 304200 - 304257
Alignment:
Q  44 tccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||| ||||| ||||||||||||| |  |||| ||||||||||||||||    
T  304200 tccgcaggaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttgga 304257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 27702079 - 27702030
Alignment:
Q  52 aaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||| |||||||| |||||||||| ||| |||||||| |||||||||||    
T  27702079 aaaagctaaaacttttagtaatggctggatttgttacagagaaagttgga 27702030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 3384081 - 3384166
Alignment:
Q  16 agaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||| | ||||||||||||||||||| ||||| ||||| ||||| ||||||  ||||||| ||||||||||||||||    
T  3384081 agaatttacacaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatggtaggacttgctacaaagaaagttgga 3384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 13243155 - 13243062
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | ||||||| |||||| |||||||||| ||||| ||||| ||||||| || |||| |||||| |||||||||    
T  13243155 tttcctgcggaatttacacaaaactccgcagataaatctgcaggaaaagctaaaagttctaataatggctgggcttgctacaaaaaaagttgga 13243062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 24965073 - 24965013
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  24965073 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 24965013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 34282972 - 34283032
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||| ||||| ||||||||||| | ||||||| ||||||||||||||||    
T  34282972 aaatccgcaagaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttgga 34283032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 36406552 - 36406636
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||   ||||||||||||||| ||||||||| ||||| || ||||||||   || |||| ||||||||||||||||    
T  36406552 gaatttacacaaatatccgcaggtaaatccacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttgga 36406636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 38214799 - 38214739
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||| |||||||||| |||||    
T  38214799 aaatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattgga 38214739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 39431725 - 39431809
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||| | |||||||||||||||||| |||||| ||||| ||| |||||| |  ||  ||| ||||||||||||||||    
T  39431725 gaatttacacaaaactccgcaggtaaatccgcaagaaaagctaaaagttcaagtaattgaagggtttgctacaaagaaagttgga 39431809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 8968379 - 8968314
Alignment:
Q  32 tccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagt 97  Q
    ||||||||||||||||||| |||||| | |  ||||||||||||| ||||||| ||||||| ||||    
T  8968379 tccgcaggtaaatccgcagaaaaagtgataggttctagtaatggctggacttgctacaaaggaagt 8968314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 28928096 - 28928039
Alignment:
Q  44 tccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||| ||||| ||||||||||||   | |||| ||||||||||||||||    
T  28928096 tccgcaggaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttgga 28928039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 25237638 - 25237545
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||| | ||||| ||||||||||| | ||||||  ||||||||||||||||    
T  25237638 tttcctgcggaatttacacaaaattccgcaggtaaatccgcagaaaacgctaaaagttctagtaatgactggacttactacaaagaaagttgga 25237545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 46645665 - 46645572
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||  || |||| ||||||| ||||||||    
T  46645665 tttcctgcagaatttacacaaaaatccgcaggtaaatccgcagaaaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttgga 46645572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 4728620 - 4728527
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||   | |||| ||||||||||||||||    
T  4728620 tttcctgcggaatttactcaaaaatccgcaggtaaatccgcaggaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttgga 4728527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 10058599 - 10058511
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaag 96  Q
    |||||||  |||||||||||| ||||| ||||||||||||| ||||||| ||||| |||| |||||||  || |||| |||||||||||    
T  10058599 tttcctgcggaatttacacaaaattccccaggtaaatccgcgggaaaagctaaaaattctcgtaatggttgggcttgctacaaagaaag 10058511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 50383927 - 50383869
Alignment:
Q  43 atccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||| ||||| ||||||||||||| || |||| ||||||||||||||||    
T  50383927 atccgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttgga 50383869  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9694161 - 9694068
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||||| || ||||||||  ||||||||||| ||||||||||| ||||||||||||| |  |||  |||||||||| |||||    
T  9694161 tttcctgcggaatttacataaaattccgcaaataaatccgcagaaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattgga 9694068  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 49745073 - 49745020
Alignment:
Q  48 caggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||| |||||||||||||||||||  ||||||||| |||||||||||||    
T  49745073 caggaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttgga 49745020  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 4552226 - 4552166
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  4552226 aaatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 4552166  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 9003606 - 9003537
Alignment:
Q  32 tccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| || ||||||||||| |||| |||||| | || |||| |||||||||| |||||    
T  9003606 tccgcaggtaaatccgaagaaaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattgga 9003537  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 10715696 - 10715635
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttg-ttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| |||||||||||||||||    
T  10715696 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttgga 10715635  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 10929466 - 10929405
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttg-ttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| |||||||||||||||||    
T  10929466 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttgga 10929405  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 14044419 - 14044326
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||||| || | | ||||||||||||||||||||||| ||||| || | ||||||||  | |||| |||||||||| |||||    
T  14044419 tttcctgcggaatttacataaaaattcgcaggtaaatccgcaggaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattgga 14044326  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 15034545 - 15034606
Alignment:
Q  38 ggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttg 99  Q
    |||||||| ||||||||||  |||| ||||||||||||  || |||||||||||||||||||    
T  15034545 ggtaaatctgcaggaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttg 15034606  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 2017512 - 2017572
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  |  |||| ||||||||||||||||    
T  2017512 aaatccgcaggaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttgga 2017572  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 31364176 - 31364116
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||  ||||| ||||||||||||  ||| ||| ||||||||||||||||    
T  31364176 aaatccgcaggaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttgga 31364116  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 32005955 - 32005895
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||| ||||||  || |||| ||||||||||||||||    
T  32005955 aaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttgga 32005895  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 41972512 - 41972572
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||   | |||| ||||||||||||||||    
T  41972512 aaatccgcaggaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttgga 41972572  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 11827078 - 11827161
Alignment:
Q  18 aatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||| || | || ||| |||||||||||| ||||| ||||| |||||||||||||  |||||  |||||||||| |||||    
T  11827078 aatttacataaaaatctgcaagtaaatccgcagaaaaagctaaaagttctagtaatggctagacttactacaaagaaaattgga 11827161  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 1585750 - 1585692
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttg 99  Q
    ||||| |||||||||| ||||| ||||||||||||  || |||| ||||||||||||||    
T  1585750 aaatctgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttg 1585692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 40969265 - 40969207
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttg 99  Q
    |||||||||||||||| ||||| ||||  ||||||  ||||||| ||||||||||||||    
T  40969265 aaatccgcaggaaaagctaaaaattctcataatggttggacttgctacaaagaaagttg 40969207  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 2576233 - 2576140
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  ||||||| |||| | | |||| |||||| ||||| ||||| ||||| |||| |||||||  || |||| ||||||||||||||||    
T  2576233 tttcctgcggaatttatacaaaaattcgcaagtaaattcgcagaaaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttgga 2576140  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 15529011 - 15528915
Alignment:
Q  5 acatttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||  ||||||||||||   ||||||||||||||||||||||||| ||||| ||||| ||||||  || |||| ||||||||||||||||    
T  15529011 acatttcctgcggaatttacacaaacatccgcaggtaaatccgcaggaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttgga 15528915  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 34188835 - 34188771
Alignment:
Q  37 aggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||||||||| ||| ||||||||||||| || |||| ||||||||||||||||    
T  34188835 aggtaaatccgcaggaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttgga 34188771  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 28614434 - 28614510
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaaga 93  Q
    ||||||||| || | |||||||||||||||| |||||||||||||| |||||||||||||  | |||| ||||||||    
T  28614434 gaatttacataaaaatccgcaggtaaatccgtaggaaaagttaaaagttctagtaatggctaggcttgctacaaaga 28614510  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 9046997 - 9047060
Alignment:
Q  36 caggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttg 99  Q
    ||||||||||||||||||||| ||||| ||||||||||||  ||||||  ||||||||||||||    
T  9046997 caggtaaatccgcaggaaaagctaaaaattctagtaatggttggacttactacaaagaaagttg 9047060  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 9696117 - 9696024
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||  |||||||||||| | || |||||||||||||||||||||  ||||| ||||| |||||   || |||| ||||||||||||||||    
T  9696117 tttcctgcggaatttacacaaaaatctgcaggtaaatccgcaggaaaatctaaaaattctaataatgattgggcttgctacaaagaaagttgga 9696024  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 34249088 - 34249148
Alignment:
Q  41 aaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  34249088 aaatccgcaggaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttgga 34249148  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 2960724 - 2960665
Alignment:
Q  42 aatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||| ||||| |||||||| |||| ||||||| |||||||||| |||||    
T  2960724 aatccgcaggaaaagctaaaagttctagtattggctggacttgctacaaagaaaattgga 2960665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 2836253 - 2836347
Alignment:
Q  7 atttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||  |||||||||| | | ||||||| | ||||||||| ||||| ||||| |||||| |||||  ||  ||| ||||||||||||||||    
T  2836253 atttcctgcggaatttacacgaaaatccgcagatcaatccgcagaaaaagctaaaagttctaggaatggttgggtttgctacaaagaaagttgga 2836347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 15122105 - 15122039
Alignment:
Q  8 tttcctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatg 74  Q
    ||||||| |||||||| |||  | ||||||||||||||||||| ||||| ||||| ||||| |||||    
T  15122105 tttcctgcagaatttagacacaaatccgcaggtaaatccgcagaaaaagctaaaaattctaataatg 15122039  T

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Target: scaffold0638 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 4148 - 4079
Alignment:
Q  32 tccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||| || |||| |||||||||| |||||    
T  4148 tccgcaggtaaattcgcaggaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattgga 4079  T

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Target: scaffold0021 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 109362 - 109446
Alignment:
Q  17 gaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    |||||||||||| | | ||||||||||||| ||||||||||||||| ||||||||||  | ||  ||| ||||||||||||||||    
T  109362 gaatttacacaaaaattcgcaggtaaatccacaggaaaagttaaaagttctagtaataactggggttgctacaaagaaagttgga 109446  T

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Target: scaffold0021; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 112272 - 112333
Alignment:
Q  12 ctgtagaatttacacaacattccgcaggtaaatccgcaggaaaagttaaaacttctagtaat 73  Q
    |||| |||||||||||| | | |||||||||||||| |||||||||||||| ||||||||||    
T  112272 ctgtggaatttacacaaaaattcgcaggtaaatccgtaggaaaagttaaaagttctagtaat 112333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 6950 - 6891
Alignment:
Q  42 aatccgcaggaaaagttaaaacttctagtaatggccggacttgttacaaagaaagttgga 101  Q
    ||||||||||||||| ||||| ||||||||||||  || |||| ||||||||||||||||    
T  6950 aatccgcaggaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgga 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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