View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4784-Insertion-3 (Length: 484)

Name: NF4784-Insertion-3
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4784-Insertion-3
NF4784-Insertion-3
[»] chr3 (7 HSPs)
chr3 (7-453)||(1727175-1727622)
chr3 (125-345)||(15669120-15669337)
chr3 (286-331)||(13147007-13147052)
chr3 (286-328)||(15841106-15841148)
chr3 (286-331)||(1061431-1061476)
chr3 (286-331)||(12240464-12240509)
chr3 (286-331)||(18004834-18004879)
[»] chr6 (5 HSPs)
chr6 (127-210)||(19220168-19220251)
chr6 (286-331)||(17611499-17611544)
chr6 (376-425)||(12349486-12349535)
chr6 (286-331)||(17780873-17780918)
chr6 (286-331)||(22383858-22383903)
[»] chr7 (4 HSPs)
chr7 (188-341)||(24832055-24832208)
chr7 (148-216)||(4447123-4447191)
chr7 (377-435)||(27289231-27289289)
chr7 (286-331)||(13177379-13177424)
[»] chr2 (1 HSPs)
chr2 (286-331)||(24804576-24804621)
[»] chr1 (3 HSPs)
chr1 (356-453)||(27518805-27518902)
chr1 (286-331)||(19162628-19162673)
chr1 (286-331)||(22652536-22652581)
[»] scaffold0382 (2 HSPs)
scaffold0382 (286-331)||(4230-4275)
scaffold0382 (286-331)||(12613-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (286-331)||(2629-2674)
[»] chr8 (3 HSPs)
chr8 (278-331)||(23802576-23802629)
chr8 (286-331)||(3840826-3840871)
chr8 (286-331)||(23790529-23790574)
[»] chr4 (1 HSPs)
chr4 (376-423)||(39042706-39042753)
[»] scaffold0010 (1 HSPs)
scaffold0010 (286-331)||(112857-112902)
[»] chr5 (3 HSPs)
chr5 (286-331)||(13531066-13531111)
chr5 (286-331)||(23485971-23486016)
chr5 (286-331)||(25182199-25182244)
[»] scaffold0892 (1 HSPs)
scaffold0892 (286-330)||(1346-1390)
[»] scaffold0016 (1 HSPs)
scaffold0016 (283-331)||(197574-197622)
[»] scaffold0012 (1 HSPs)
scaffold0012 (283-331)||(135591-135639)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Original strand, 1727175 - 1727622
Alignment:
Q  7 agaaacatccttgtgctgagttcatacaaaatggtatgtattcctacttaattccaaaag-tgggaaagctaaggttcttaacgagtcaaagtcaagggc 105  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||  ||| ||||| ||| |||||||||||||||||| ||||||||||||||||    
T  1727175 agaaacctccttatgctgagttcatacaaaatggtatgtattcctactttgttctaaaagctggaaaagctaaggttcttaacaagtcaaagtcaagggc 1727274  T
Q  106 tttagagtctaaggagctaatcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaa 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1727275 tttagagtctaaggatctaatcaaatcaaaaccaaatattccagagtccaaggttctgaatagttcaaaacctaaagctaagaagaattcaagacctaaa 1727374  T
Q  206 acctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataactaaccccaaagaaccca 305  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  1727375 acctttaaaccaaaagtcttgaatgattctaagccacatatcttgaagcctaaagttctgaagaaggaaaagtccttcagagctaaccccaaagaaccca 1727474  T
Q  306 tgaatatatgtgtacctaagtctgaaattttctatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcat 405  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  1727475 tgaaaatatgtgtacctaagtctgaaattttatatgctacagaaacactttatgggagaaccaacgcttcagtcatggtacctggacagtggttactcat 1727574  T
Q  406 gacacatgacaagagaaaagcatattttccaaacattaacactgaaag 453  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  1727575 gacacatgacaagagaaaagcacattttccaaacattaacactgaaag 1727622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 125 - 345
Target Start/End: Original strand, 15669120 - 15669337
Alignment:
Q  125 atcaaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtct 224  Q
    ||||||||||||||||| ||||||  |||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  15669120 atcaaatcaaaaccaaagattccaatgtccaaagttctgaatagtccaaaacctaaagctaataagaattcaaggcctaaaacttttaaaccaaaagtct 15669219  T
Q  225 tgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataactaaccccaaagaacccatgaatatatgtgtacctaa 324  Q
    | ||||||||||| ||  ||| ||||||||||||||||||   ||||||||| | ||| | ||| ||| |||||| ||||||||| ||||| |||| |||    
T  15669220 tcaatgattctaatccatatagcttgaagcctaaggttct---gaaggaaaaatactttagaacaaacaccaaaggacccatgaaaatatgggtacataa 15669316  T
Q  325 gtctgaaattttctatgctac 345  Q
    |||| ||||||||||||||||    
T  15669317 gtctaaaattttctatgctac 15669337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 13147052 - 13147007
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  13147052 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 13147007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 15841148 - 15841106
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtct 328  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  15841148 aactaaccccaaaggacccatgaagatatgggtacctaagtct 15841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 1061476 - 1061431
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  1061476 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 1061431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 12240464 - 12240509
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||||||||||||| ||||| |||||||| ||||||    
T  12240464 aactaacccaaaagaacccatgaagatatgggtacctaaatctgaa 12240509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 18004879 - 18004834
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  18004879 aactaaccccaaaggacccatgaagatatgggtacctaaatctgaa 18004834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 19220168 - 19220251
Alignment:
Q  127 caaatcaaaaccaaatattccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctt 210  Q
    ||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||||||    
T  19220168 caaatcaaaaccaaatacttcagagtccaaggttctgaagagttcaaaacctaaagctatgaagaattcaagatcaaaaacctt 19220251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 17611499 - 17611544
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  17611499 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 17611544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 12349535 - 12349486
Alignment:
Q  376 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaaag 425  Q
    ||||||||||| || ||||||||| |||| ||||||||||| ||||||||    
T  12349535 agtcatggtacctgtacagtggttgctcacgacacatgacaggagaaaag 12349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 17780918 - 17780873
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17780918 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 22383903 - 22383858
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  22383903 aactaacctcaaaggacccatgaaaatatgggtacctaagtctgaa 22383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 24832208 - 24832055
Alignment:
Q  188 aagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcataa 287  Q
    ||||| ||||||||  | || |||||| | || ||| |||||||||  ||||  |||| |||||||||||| | | |||| |||||||| ||||| | ||    
T  24832208 aagaaatcaagaccagacacttttaaatctaaggtcctgaatgattaaaagcatcatagcttgaagcctaaaggtatgaaaaaggaaaattcctttagaa 24832109  T
Q  288 ctaaccccaaagaacccatgaatatatgtgtacctaagtctgaaattttctatg 341  Q
    |||||||||||| ||||||||| ||||| ||||| | |||||||||||||||||    
T  24832108 ctaaccccaaagtacccatgaaaatatgggtacccacgtctgaaattttctatg 24832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 4447191 - 4447123
Alignment:
Q  148 agagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaacc 216  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||  | |||||||||||||    
T  4447191 agagcccaaggttctaaagagttcaaaacctaaatctaagaagaattcaagatatgaaacctttaaacc 4447123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 435
Target Start/End: Original strand, 27289231 - 27289289
Alignment:
Q  377 gtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttcc 435  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| ||||    
T  27289231 gtcatggtacttggacagtggttgctcgtgtcacatgacaggagaaaagcctatgttcc 27289289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 13177379 - 13177424
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13177379 aactaaccctaaaggacccatgaagatatgggtacctaagtctgaa 13177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 24804576 - 24804621
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  24804576 aactaaccccaaagaacccatgaagatatgggtacctaagtctgaa 24804621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 453
Target Start/End: Original strand, 27518805 - 27518902
Alignment:
Q  356 tatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 453  Q
    |||||||||| ||| | | |||||||||||| |||||||| ||| |||  || ||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  27518805 tatgggagaatcaaagttccagtcatggtacctgaacagtagttgctcccgatacatgacaatagaaaagcatatgttccaaaccctaacattgaaag 27518902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 19162628 - 19162673
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  19162628 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 19162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 22652581 - 22652536
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  22652581 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 22652536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 4230 - 4275
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4230 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 4275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 12613 - 12658
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  12613 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 12658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 2629 - 2674
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  2629 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 2674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 23802629 - 23802576
Alignment:
Q  278 tccttcataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||| |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23802629 tcctccataactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 3840871 - 3840826
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  3840871 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 3840826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 23790574 - 23790529
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23790574 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23790529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 39042753 - 39042706
Alignment:
Q  376 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaa 423  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  39042753 agtcatggtacctggacagtggttgctcacgacacatgacaagagaaa 39042706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 112902 - 112857
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  112902 aactaacccaaaagtacccatgaagatatgggtacctaagtctgaa 112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 13531111 - 13531066
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13531111 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 13531066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 23486016 - 23485971
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| || |||||| ||||| |||||||||||||||    
T  23486016 aactaaccccaaaggacacatgaagatatgggtacctaagtctgaa 23485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 25182199 - 25182244
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  25182199 aactaaccccaaaggacccatgaagatatgcgtacctaagtttgaa 25182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0892 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 1346 - 1390
Alignment:
Q  286 aactaaccccaaagaacccatgaatatatgtgtacctaagtctga 330  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  1346 aactaacccaaaaggacccatgaagatatgggtacctaagtctga 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 197622 - 197574
Alignment:
Q  283 cataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  197622 cataactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 197574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 135639 - 135591
Alignment:
Q  283 cataactaaccccaaagaacccatgaatatatgtgtacctaagtctgaa 331  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  135639 cataactaaccctaaaggacccatgaagatatgggtacctaaatctgaa 135591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University