View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4784_high_1 (Length: 451)

Name: NF4784_high_1
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4784_high_1
NF4784_high_1
[»] chr6 (12 HSPs)
chr6 (18-445)||(31145210-31145637)
chr6 (18-445)||(31171523-31171950)
chr6 (18-423)||(31189268-31189673)
chr6 (205-445)||(30955204-30955444)
chr6 (18-445)||(31201075-31201502)
chr6 (18-423)||(31224476-31224881)
chr6 (205-445)||(30944944-30945184)
chr6 (18-423)||(30992453-30992858)
chr6 (18-445)||(30960949-30961376)
chr6 (119-445)||(31214185-31214511)
chr6 (18-420)||(31229759-31230161)
chr6 (18-69)||(30945317-30945368)
[»] chr7 (10 HSPs)
chr7 (347-425)||(31618457-31618535)
chr7 (350-423)||(31438982-31439055)
chr7 (347-423)||(31541209-31541285)
chr7 (341-413)||(31585591-31585663)
chr7 (344-419)||(31608444-31608519)
chr7 (347-425)||(31572804-31572881)
chr7 (179-300)||(31576019-31576140)
chr7 (179-300)||(31604685-31604806)
chr7 (212-252)||(31585462-31585502)
chr7 (185-253)||(31614566-31614634)
[»] chr8 (2 HSPs)
chr8 (179-243)||(44035822-44035886)
chr8 (344-425)||(44035640-44035721)
[»] chr1 (14 HSPs)
chr1 (185-234)||(9125105-9125154)
chr1 (338-419)||(9233930-9234011)
chr1 (171-240)||(49725331-49725400)
chr1 (341-423)||(49725148-49725230)
chr1 (341-423)||(49728570-49728652)
chr1 (185-234)||(9069637-9069686)
chr1 (338-419)||(9384383-9384464)
chr1 (191-236)||(9495608-9495653)
chr1 (195-228)||(10907006-10907039)
chr1 (195-228)||(10930889-10930922)
chr1 (195-228)||(10993093-10993126)
chr1 (195-228)||(11041252-11041285)
chr1 (182-234)||(8861524-8861576)
chr1 (347-419)||(11011057-11011129)
[»] chr4 (2 HSPs)
chr4 (344-423)||(15063329-15063408)
chr4 (178-234)||(27696365-27696421)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 31145210 - 31145637
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31145210 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 31145309  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31145310 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataa 31145409  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || ||||||  | |||     
T  31145410 ctataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatctgacattgaaataa 31145509  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31145510 tgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatg 31145609  T
Q  418 taaaatccgggtattacatcccctatgc 445  Q
    |||||| || ||  ||||||| ||||||    
T  31145610 taaaattcgagtggtacatcctctatgc 31145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 31171523 - 31171950
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171523 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 31171622  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31171623 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataa 31171722  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || ||||||  | |||     
T  31171723 ctataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatctgacattgaaataa 31171822  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  31171823 tgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatg 31171922  T
Q  418 taaaatccgggtattacatcccctatgc 445  Q
    |||||| || ||  ||||||| ||||||    
T  31171923 taaaattcgagtggtacatcctctatgc 31171950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 31189268 - 31189673
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189268 gaatgcaccataaacccacaattgtcattctccttgcaatctcgtcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 31189367  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  31189368 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaataatgtttttcctcccaccaaccatttccagcaacatcattccataa 31189467  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || || |||  | |||     
T  31189468 ctataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatctgtcatcgaaataa 31189567  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||||||||| |   ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  31189568 tgctctctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatg 31189667  T
Q  418 taaaat 423  Q
    ||||||    
T  31189668 taaaat 31189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 205 - 445
Target Start/End: Complemental strand, 30955444 - 30955204
Alignment:
Q  205 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955444 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30955345  T
Q  305 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955344 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 30955245  T
Q  405 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 445  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30955244 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 30955204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 31201075 - 31201502
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||| | |||||||| |||||    
T  31201075 gaatgcaccataaacccacaattgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcct 31201174  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    |||||||||||| || ||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  31201175 attgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcattaatgtttttcctccctccaaccatttccagcaacatcattccataa 31201274  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |  || ||||||  || ||||||  | |||     
T  31201275 ctataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctctttgatctgacatcgaaataa 31201374  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    ||||||| |||    |||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||    
T  31201375 tgctctcgttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatg 31201474  T
Q  418 taaaatccgggtattacatcccctatgc 445  Q
    |||||| || ||  ||||||| ||||||    
T  31201475 taaaattcgagtggtacatcctctatgc 31201502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 31224881 - 31224476
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||| |  ||||||||||| | || | |  ||||||| |||||    
T  31224881 gaatacaccacaaacctacaatggtcattctccttgcaatcttatcttcttctgtatccattattccatcaggtctaaaatcactagcaagctcaagcct 31224782  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
     |||||||||||||| ||||| ||||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||    
T  31224781 tttgtatacccaatgaggaaaatatatctcacttgtgcgacttgcatcagcattaatgtttttcctccctccaaccatttccagcaatatcattccataa 31224682  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||  || ||||||  | | |     
T  31224681 ctataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgttcctctttgatctgacattgaaacaa 31224582  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||| ||||||  |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  31224581 tgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatg 31224482  T
Q  418 taaaat 423  Q
    ||||||    
T  31224481 taaaat 31224476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 205 - 445
Target Start/End: Complemental strand, 30945184 - 30944944
Alignment:
Q  205 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945184 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30945085  T
Q  305 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 404  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30945084 gacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggtt 30944985  T
Q  405 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 445  Q
    |||| |||||||||||||||||| ||||||| |||||||||    
T  30944984 ttatgtcaaaatgtaaaatccggatattacaccccctatgc 30944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 30992858 - 30992453
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||| ||||| |||| |||||| ||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||| || | | ||||| || |||||    
T  30992858 gaatacaccacaaactcacaatggtcatcctctttgcaatctcatcttcttccgtatccattaccccatcaggtctcaaataactaccaagttcaagcct 30992759  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| ||| | || |||||||  || || |||||||| | ||||||||||||||||    
T  30992758 attgtatacccaatgaggaaagtatatctcacttgtgtgacttgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataa 30992659  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||  ||  |||||  | | |     
T  30992658 ctataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgtccctctttgatccgacatcgaaacaa 30992559  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||    
T  30992558 tgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatg 30992459  T
Q  418 taaaat 423  Q
    ||||||    
T  30992458 taaaat 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 30961376 - 30960949
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||| ||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||  | |||||||||||||||| || | | ||||| || |||||    
T  30961376 gaatacaccacaaacccacaatggtcattctctttgcaatctcattttcttctgtatcagttaccccatcaggtctcaaatcactaccaagttcaagcct 30961277  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| ||| | || |||||||  || || |||||||| | ||||||||||||||||    
T  30961276 attgtatacccaatgaggaaagtatatctcacttgtgtgacttgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataa 30961177  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || | ||| ||||||  ||  |||||  | | |     
T  30961176 ctataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttcaggagctacataccccattgtccctctttgatccgacatcgaaacaa 30961077  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||    
T  30961076 tgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggttttatgtcaaaatg 30960977  T
Q  418 taaaatccgggtattacatcccctatgc 445  Q
    |||||| || |||  |||||| ||||||    
T  30960976 taaaattcgagtagcacatcctctatgc 30960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 119 - 445
Target Start/End: Complemental strand, 31214511 - 31214185
Alignment:
Q  119 ttgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataac 218  Q
    |||||||||||||  ||||||||| ||||||| || ||||||||||  ||| | ||||||||||| ||||| |  ||||||| |||||||||||| ||||    
T  31214511 ttgtatacccaatcaggaaagtatttctcacttgtatgacttgcattggcactaatgtttttccttcctccgattatttccaacaacatcattccgtaac 31214412  T
Q  219 tataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatagt 318  Q
    ||||||||||||||||||  ||||| |||||||| | ||||||||| |  || |||||||||||||| |  |||||||| |||  ||||||  | ||| |    
T  31214411 tataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctctagcacctgacatcgaaataat 31214312  T
Q  319 gctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgt 418  Q
    ||| ||||||| |||||| ||  ||||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||    
T  31214311 gctttctttcttgagacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgt 31214212  T
Q  419 aaaatccgggtattacatcccctatgc 445  Q
    ||||| || ||| | ||||| ||||||    
T  31214211 aaaattcgagtactgcatcctctatgc 31214185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 31230161 - 31229759
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcct 117  Q
    |||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |   | || ||  | || ||||||| || | |||  || || ||  |    
T  31230161 gaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttccgagacaatcacttcgtccggtctcaaatcattgcgtagatcaagatt 31230062  T
Q  118 attgtatacccaatgtggaaagtatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttccagcaacatcattccataa 217  Q
     |||||||||||||| ||||||||||||||||| || ||||||||||| ||  | |||||||||||||| ||||||||||| ||||||||||||||||||    
T  31230061 cttgtatacccaatgaggaaagtatatctcacttgtttgacttgcatcggcgttaatgtttttcctcccaccaaccatttctagcaacatcattccataa 31229962  T
Q  218 ctataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttgacatgaatatag 317  Q
    |||||||| ||||||||||| ||||||| |||||| | | |||||||||  || ||||||||||| || | ||| ||||| || | ||||||  | |||     
T  31229961 ctataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctctagcgtctgacatagaaataa 31229862  T
Q  318 tgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatg 417  Q
    ||||||||||||   | || ||  ||| ||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||| || ||||||||    
T  31229861 tgctctctttcttatggcaaagtcttgaaagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtttgatgtcaaaatg 31229762  T
Q  418 taa 420  Q
    |||    
T  31229761 taa 31229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 30945368 - 30945317
Alignment:
Q  18 gaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 69  Q
    |||||||||||||||| |||||||||||||   |||||||||||| ||||||    
T  30945368 gaatgcaccataaaccaacaatagtcattccttttgcaatctcattttcttc 30945317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 31618457 - 31618535
Alignment:
Q  347 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 425  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||| |||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 31618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 423
Target Start/End: Complemental strand, 31439055 - 31438982
Alignment:
Q  350 ccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 423  Q
    |||||||| || || |||||||| |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  31439055 ccaaaatcagatatttttggacaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 31438982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 31541209 - 31541285
Alignment:
Q  347 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 423  Q
    ||||||||||| || || || || || ||||||||||| ||||||||||| |||||||| ||||||| ||| |||||    
T  31541209 agtccaaaatcagagattttggggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaat 31541285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 31585591 - 31585663
Alignment:
Q  341 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa 413  Q
    ||||| ||||||||||| || || |||||||| |||| |||||| ||||||||||| || ||||| |||||||    
T  31585591 tttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaa 31585663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 31608444 - 31608519
Alignment:
Q  344 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 419  Q
    |||||||||||||| || || |||||||| || | |||||| ||||||||||| || ||||| ||||||| |||||    
T  31608444 gcaagtccaaaatcagatatttttggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgta 31608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 31572881 - 31572804
Alignment:
Q  347 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 425  Q
    ||||||||||| || || ||||| || |||| |||||| ||||||||||| || ||||||||||||| ||| |||||||    
T  31572881 agtccaaaatcagagatttttgggcaaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatcc 31572804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 31576019 - 31576140
Alignment:
Q  179 ttcctccctccaaccatttccagcaacatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagcta 278  Q
    ||||| ||||| | |||||| || | || ||| ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || |    
T  31576019 ttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgcca 31576118  T
Q  279 catatccgactgttcctcttgc 300  Q
     |||||| | ||||||||||||    
T  31576119 tatatcctattgttcctcttgc 31576140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 31604685 - 31604806
Alignment:
Q  179 ttcctccctccaaccatttccagcaacatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagcta 278  Q
    ||||| ||||| | |||||| || | || ||| ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || |    
T  31604685 ttccttcctccgatcatttcaagaatcaacatgccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgcca 31604784  T
Q  279 catatccgactgttcctcttgc 300  Q
     |||||| | ||||||||||||    
T  31604785 tatatcctattgttcctcttgc 31604806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 31585462 - 31585502
Alignment:
Q  212 ccataactataaacatcagacttgtgtgaaactcctccaaa 252  Q
    ||||||||||| |||||||||||||| |||||||| |||||    
T  31585462 ccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 31614566 - 31614634
Alignment:
Q  185 cctccaaccatttccagcaacatcattccataactataaacatcagacttgtgtgaaactcctccaaat 253  Q
    ||||||| |||||| || | || ||||||||||||||| |||||||| ||||  |||||||| ||||||    
T  31614566 cctccaatcatttcaagaatcaacattccataactatatacatcagatttgtaagaaactccgccaaat 31614634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 44035886 - 44035822
Alignment:
Q  179 ttcctccctccaaccatttccagcaacatcattccataactataaacatcagacttgtgtgaaac 243  Q
    |||| ||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  44035886 ttccgcccaccaaccatttctagcaacatcattccgtaactatagacatcagacttatgtgaaac 44035822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 44035721 - 44035640
Alignment:
Q  344 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 425  Q
    |||||||||||||| || ||||| ||||   || |||| || |||||||||||||||||||| || || ||||| |||||||    
T  44035721 gcaagtccaaaatcagatatcttgggacggtaagtttcgtccaaaagaatgttatgtggtttaatgtcgaaatgaaaaatcc 44035640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 9125105 - 9125154
Alignment:
Q  185 cctccaaccatttccagcaacatcattccataactataaacatcagactt 234  Q
    |||||||||| ||||||||||| ||| ||||||||||||| |||||||||    
T  9125105 cctccaaccaattccagcaacaacatcccataactataaatatcagactt 9125154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 9234011 - 9233930
Alignment:
Q  338 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 419  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || |||||||||||||    
T  9234011 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9233930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 49725400 - 49725331
Alignment:
Q  171 tgatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcagacttgtgtga 240  Q
    |||||||||| ||||  |||||||||||||  | ||||||||||||||| |||||||| ||||| |||||    
T  49725400 tgatgttttttctcctcccaaccatttccatgaccatcattccataactgtaaacatctgacttatgtga 49725331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 49725230 - 49725148
Alignment:
Q  341 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 423  Q
    ||||||||||||||||| |||||  | ||    ||||| ||||| |||||||||||||| |||||||| |||||||| |||||    
T  49725230 tttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaat 49725148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 49728652 - 49728570
Alignment:
Q  341 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 423  Q
    ||||||||||||||||| |||| ||| ||||| ||||  || ||||  |  || ||||| |||||||||||||||||||||||    
T  49728652 tttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat 49728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 9069637 - 9069686
Alignment:
Q  185 cctccaaccatttccagcaacatcattccataactataaacatcagactt 234  Q
    |||||||||||||| ||||||| |||||||||||| || | |||||||||    
T  9069637 cctccaaccatttctagcaacaacattccataactgtatatatcagactt 9069686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 9384383 - 9384464
Alignment:
Q  338 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 419  Q
    |||||||||||||||||||| |||| |||||||   || | ||| |||| |||||| ||||| || || |||||||||||||    
T  9384383 agctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9384464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 9495653 - 9495608
Alignment:
Q  191 accatttccagcaacatcattccataactataaacatcagacttgt 236  Q
    ||||| || ||||||| ||||||| |||||||||||||||||||||    
T  9495653 accatctctagcaacaacattccaaaactataaacatcagacttgt 9495608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 10907039 - 10907006
Alignment:
Q  195 tttccagcaacatcattccataactataaacatc 228  Q
    |||| |||||||||||||||||||||||||||||    
T  10907039 tttcaagcaacatcattccataactataaacatc 10907006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 10930922 - 10930889
Alignment:
Q  195 tttccagcaacatcattccataactataaacatc 228  Q
    |||| |||||||||||||||||||||||||||||    
T  10930922 tttcaagcaacatcattccataactataaacatc 10930889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 10993126 - 10993093
Alignment:
Q  195 tttccagcaacatcattccataactataaacatc 228  Q
    |||| |||||||||||||||||||||||||||||    
T  10993126 tttcaagcaacatcattccataactataaacatc 10993093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 11041285 - 11041252
Alignment:
Q  195 tttccagcaacatcattccataactataaacatc 228  Q
    |||| |||||||||||||||||||||||||||||    
T  11041285 tttcaagcaacatcattccataactataaacatc 11041252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 8861524 - 8861576
Alignment:
Q  182 ctccctccaaccatttccagcaacatcattccataactataaacatcagactt 234  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||    
T  8861524 ctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgactt 8861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 11011057 - 11011129
Alignment:
Q  347 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 419  Q
    ||||||||||| ||||  ||||||   ||||||||||| | |||||||||||| || ||||||||||| ||||    
T  11011057 agtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 423
Target Start/End: Complemental strand, 15063408 - 15063329
Alignment:
Q  344 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 423  Q
    ||||| |||||||| || || ||||| || |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  15063408 gcaagaccaaaatcagatatttttgggcaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 15063329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 27696421 - 27696365
Alignment:
Q  178 tttcctccctccaaccatttccagcaacatcattccataactataaacatcagactt 234  Q
    |||||| |||||||||||||| || | || ||| ||||||||||||||||| |||||    
T  27696421 tttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgactt 27696365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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