View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4784_high_2 (Length: 395)
Name: NF4784_high_2
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4784_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 39 - 379
Target Start/End: Original strand, 55139341 - 55139681
Alignment:
| Q |
39 |
ctaaaatcacacaattacaatatgtggtgaatttaaaagggaagnnnnnnnnttatgggagcaagnnnnnnnnnncaagagttaagctcagacaaacaag |
138 |
Q |
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| T |
55139341 |
ctaaaatcacacaattacaatatgtggtgaatttaaaaaggaagaaaaaaaattatgggagcaagaaaaaaaaaacaagagttaagctcagacaaacaag |
55139440 |
T |
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| Q |
139 |
aatagtccacgacctcacaatcttagcattacgatctt--catctttagatttcaaatctctaacgtaaacaatctttttgatttggttaattaaagagc |
236 |
Q |
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| T |
55139441 |
aatagtccacgacctcacaatcttagcattacgatcttttcatctttagatttcaaatctctaacgtaaacaatctttttgatttggttaattaaggagc |
55139540 |
T |
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| Q |
237 |
tcctgatctgactaatgattgttctgaaagattctgatattccttttgtttccaaatcatatattgtagttacaattgttcatgttgcacagactttgaa |
336 |
Q |
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| T |
55139541 |
tcctaatctgactaatgattgttctgaaagattctgatattccttttgtttccaaattatatattg--cgtacaattgttcatgttgcactgactttaaa |
55139638 |
T |
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| Q |
337 |
tatattgaatcacacactgtcaattactagcataaatgttcat |
379 |
Q |
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| T |
55139639 |
tatattgaatcacacactgtcaattactagtataaatgttcat |
55139681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 10715565 - 10715430
Alignment:
| Q |
132 |
aaacaagaatagtccacgacctcacaatcttagcattacgatcttcatct--ttagatttcaaatctctaacgtaaacaatctttttgatttggttaatt |
229 |
Q |
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| T |
10715565 |
aaacaagaatagcccacaacctcacaatcttggtattaggctcttcatttgtttagttttcaaacctctaatgtaaataatctctttgatttggttaag- |
10715467 |
T |
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| Q |
230 |
aaagagctcctgatctgactaatgattgttctgaaagatt |
269 |
Q |
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| T |
10715466 |
---gggctcctgagctgattaatgattgttttgaaagatt |
10715430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 50715851 - 50715905
Alignment:
| Q |
312 |
ttgttcatgttgcacagactttgaatatattgaatcacacactgtcaattactag |
366 |
Q |
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| T |
50715851 |
ttgttcatgttgcattgactttgaatacattgcatcacaccctgtcaaatactag |
50715905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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