View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4784_high_5 (Length: 267)
Name: NF4784_high_5
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4784_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 41311812 - 41311871
Alignment:
| Q |
113 |
tattgatcgtctataatatttgtattgtccctttcaaaataaaatatttgtattgtctaa |
172 |
Q |
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| T |
41311812 |
tattgatcgtctataatatttgtattgtccctttcaaaataaaatatttgtattgtctaa |
41311871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 41316412 - 41316473
Alignment:
| Q |
52 |
tagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaactgat |
113 |
Q |
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| T |
41316412 |
tagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaactgat |
41316473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 41324481 - 41324538
Alignment:
| Q |
52 |
tagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaac |
109 |
Q |
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| T |
41324481 |
tagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaac |
41324538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 41312363 - 41312416
Alignment:
| Q |
187 |
aaggaatgcagcgattgtactaaattttaatgtttatactttgtattctattgg |
240 |
Q |
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| T |
41312363 |
aaggaatgcagcgattgtagtaaattttaatgtttatactttgtattctattgg |
41312416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 41328379 - 41328436
Alignment:
| Q |
52 |
tagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaac |
109 |
Q |
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| T |
41328379 |
tagtagatgttcttctcaagattcaacaggaaaattatcactcagaacatcctttaac |
41328436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 41310672 - 41310729
Alignment:
| Q |
52 |
tagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaac |
109 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
41310672 |
tagtagatgttcttctcaagattaaacaggaaaattatcactcagaacatcctttaac |
41310729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 41332392 - 41332449
Alignment:
| Q |
52 |
tagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaac |
109 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
41332392 |
tagtagatgttcttctcaagattcaacaggaaaattattactcagaacatcctttaac |
41332449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 41337300 - 41337382
Alignment:
| Q |
31 |
aaacgagcaaggataatgacttagtagatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaactgat |
113 |
Q |
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|||| ||||||||| | ||| |||| ||||||||||||||| ||||||| |||||| |||||||||||| || || |||||| |
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| T |
41337300 |
aaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgat |
41337382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41366521 - 41366598
Alignment:
| Q |
1 |
tcatcgatgatcataaacgtagtaacaaggaaacgagcaaggataatgacttagtagatgttcttctcaagattcaac |
78 |
Q |
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||||||||||||| ||| ||||| ||||| || | || ||| || |||| ||||||||||||||||||||||||||| |
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| T |
41366521 |
tcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaac |
41366598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 31188469 - 31188417
Alignment:
| Q |
62 |
tcttctcaagattcaacaagaaaattatcactcacaacatcctttaactgata |
114 |
Q |
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|||||||||||||||||| |||||| |||||||||| |||| |||||||||| |
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| T |
31188469 |
tcttctcaagattcaacaggaaaatgatcactcacataatccattaactgata |
31188417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 41286426 - 41286482
Alignment:
| Q |
57 |
gatgttcttctcaagattcaacaagaaaattatcactcacaacatcctttaactgat |
113 |
Q |
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||||||||||||||||||||||| |||| | | |||||| ||||||| || |||||| |
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| T |
41286426 |
gatgttcttctcaagattcaacaggaaagtgagcactcataacatcccttgactgat |
41286482 |
T |
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