View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4784_high_9 (Length: 230)

Name: NF4784_high_9

Description: NF4784

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4784_high_9

[»] chr3 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 179; E-Value: 9e-97

Query Start/End: Original strand, 20 - 218

Target Start/End: Original strand, 7459427 - 7459625

Alignment:

Q	20	atttcttttgagcatacccttatctcaattcttacgagagtttatttattatccttattaattaaatcatatacattcttttgtatttgctttagtttat	119	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	7459427	atttcttctgagcatacccttatctcaattcttacgagagtgtatttattatccttattaattaaatcatatacattcttttgtatttgctttagattat	7459526	T

Q	120	cggtataatcacctattgcgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttggagtataatct	218	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7459527	cggtataatcatctattacgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttggagtataatct	7459625	T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 129 - 209

Target Start/End: Original strand, 17336542 - 17336615

Alignment:

Q	129	cacctattgcgtttggttggataagtaagttggtgaaaaatacttggttggagttgattcacaacttagtgtttggttgga	209	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	17336542	cacctattgtatttggtttgataagtaagttggtgtaaaatacttgg-------tgattcacaacttagtctttggttgga	17336615	T

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