View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4784_low_11 (Length: 224)
Name: NF4784_low_11
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4784_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 42257757 - 42257960
Alignment:
| Q |
1 |
acaggttttgatccacctgaaaattgtaattaggaccaaaatccttgccaattaattgattaaaattttgaacctaaacaggttgaataaatgaatgtca |
100 |
Q |
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| T |
42257757 |
acaggttttgatccacctgaaaattgtaattaggaccaaaatccttgccaattaattgattaaaattttgaacctaaacaggttgaataaatgaatgtca |
42257856 |
T |
|
| Q |
101 |
cctccaccaccaccaccaacatcccaagtgtcagaaagtaggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatc |
200 |
Q |
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| T |
42257857 |
cctccaccaccaccaccaccatcccaagtgtcagaaaataggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatatc |
42257956 |
T |
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| Q |
201 |
ttgt |
204 |
Q |
| |
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|||| |
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| T |
42257957 |
ttgt |
42257960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 42263255 - 42263459
Alignment:
| Q |
3 |
aggttttgatccacctgaaaattgtaattaggaccaaaatccttgccaattaattgattaaaattttgaacctaaacaggttgaataaatgaatgtcacc |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42263255 |
aggttttgatccacctgaaaattgtaattaggaccaaaatccttgccaattaattgattaaaattttgaacctaaacaggttgaataaatgaatgtcacc |
42263354 |
T |
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| Q |
103 |
t---ccaccaccaccaccaacatcccaagtgtcagaaagtaggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatat |
199 |
Q |
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| T |
42263355 |
tccaccaccaccaccaccaccatcccaagtgtcagaaaataggactaaagagaggccaagtacacagagtgttcctccacataactgccatagggaatat |
42263454 |
T |
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| Q |
200 |
cttgt |
204 |
Q |
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||||| |
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| T |
42263455 |
cttgt |
42263459 |
T |
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