View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4784_low_7 (Length: 240)
Name: NF4784_low_7
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4784_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30955673 - 30955895
Alignment:
| Q |
1 |
atgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955673 |
atgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttgg |
30955772 |
T |
|
| Q |
101 |
atctataagtatatttcaagttaacttttcattttgt-nnnnnnnnnnnnnggtatgttcttcataatannnnnnngtgtactttctagatattaagcaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30955773 |
atctataagtatatttcaagttaacttttcattttgtaaaaaaatgaaaaaggtatgttcttcataatatttttttgtgtactttctagatattaagcaa |
30955872 |
T |
|
| Q |
200 |
ttagattacatatatgtgattca |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
30955873 |
ttagattacatatatgtgattca |
30955895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 30945413 - 30945549
Alignment:
| Q |
1 |
atgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttgg |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30945413 |
atgttggaaggtagcatgaatatccttgaaataccaccaaaacctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaatttgg |
30945512 |
T |
|
| Q |
101 |
atctataagtatatttcaagttaacttttcattttgt |
137 |
Q |
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| T |
30945513 |
atctataagtatatttcaagttaacttttcattttgt |
30945549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 30961448 - 30961493
Alignment:
| Q |
28 |
gaaataccaccaaaacctttggtttcttctcctactagatcattat |
73 |
Q |
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||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
30961448 |
gaaataccaccaaaaccattgctttcgtctcctactagatcattat |
30961493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 31230233 - 31230303
Alignment:
| Q |
28 |
gaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaattt |
98 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| || ||||| ||| |||| |||||||| |
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| T |
31230233 |
gaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt |
31230303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 30992930 - 30992971
Alignment:
| Q |
28 |
gaaataccaccaaaacctttggtttcttctcctactagatca |
69 |
Q |
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||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
30992930 |
gaaataccaccaaaaccattgctttcgtctcctactagatca |
30992971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 31145141 - 31145101
Alignment:
| Q |
25 |
cttgaaataccaccaaaacctttggtttcttctcctactag |
65 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||||| |
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|
| T |
31145141 |
cttgaaataccacccaaaccgttgctttcttctcctactag |
31145101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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