View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4784_low_9 (Length: 234)
Name: NF4784_low_9
Description: NF4784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4784_low_9 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2897 - 3119
Alignment:
| Q |
1 |
ccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaacattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2897 |
ccatgatgttccttcgaattcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaacattg |
2996 |
T |
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| Q |
101 |
aatgtcgaaaatcaagataagggtcatcagaatctttctccacagctacaccttcatttccagctcttccaaatcctttcaatgatgatttctctgaccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2997 |
aatgtcgaaaatcaagataagggtcatcagaatctttctccacagctactccttcatttccagctcttccaaatcctttcaatgatgatttctctgaccc |
3096 |
T |
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| Q |
201 |
gaatgatgtgtttgttgttggtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
3097 |
gaatgatgtgtttgttgttggtg |
3119 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 42945751 - 42945876
Alignment:
| Q |
18 |
attcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || | ||| ||||| | ||||||||| |
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| T |
42945751 |
attcagctgaagaaaacagttcaaaagctctctaaggtcatctttagagtatatttcattctccaatatcatttgaagcatggaatgcctgaaatcaaga |
42945850 |
T |
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| Q |
118 |
taagggtcatcagaatctttctccac |
143 |
Q |
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| T |
42945851 |
taaggatcttcagaatctttctccac |
42945876 |
T |
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