View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785-Insertion-1 (Length: 910)
Name: NF4785-Insertion-1
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785-Insertion-1 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 749; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 8 - 910
Target Start/End: Original strand, 38884299 - 38885211
Alignment:
| Q |
8 |
ttagggaatgggtcttctatttggtgttgctttcttgttggactgtcaatttcttgattttgtttcataggtttgaacatgtctttcaacaatcaagcac |
107 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884299 |
ttagggaatgagtcttctatttggtgttgctttcttgttggactgtcaatttcttgattttgtttcataggtttgaacatgtctttcaacaatcaagcac |
38884398 |
T |
|
| Q |
108 |
atgtgatgtatgtagtcatgtgtacttttgtagcgttattatgttatataaattaaattttaagtcattctttttggtggatgaatagtgataatagcag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38884399 |
atgtgatgtatgtagtcatgtgtacttttgtagcgttattatgttatataaattaaatttgaagtcattctttttggtggatgaatagtgataatagcag |
38884498 |
T |
|
| Q |
208 |
tgttttaaaaaccggatatggtcgaaccattccgactggtaaccggtccaatatagctattggatcaagcatgtaacgaaa----------ccggccaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
38884499 |
tgttttaaaaaccggatatggtcgaaccattccgactggtaaccggtccaatataggtattggatcaagcatgtaacgaaatcggtaggaaccggccaaa |
38884598 |
T |
|
| Q |
298 |
acaaggatatttgaaccnnnnnnnnttatgttgattaatttacacacgaaacggggatggcctcagccctcgagtagttgaaaatgttttacatttcatt |
397 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38884599 |
acaaggatatttgaaccaaaaaaaattatgttgattaatttacacacgaaacggggatggcctcagccctcgagtagttgaaaatgttttacatttcatt |
38884698 |
T |
|
| Q |
398 |
aaactactattatcaaagtagtaattgtcttttttgtttccataatgtttttagactat----gatctaatttatatatgggttgatgtaaaggattttt |
493 |
Q |
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| T |
38884699 |
aaactactattatcaaagtagtaattgtcttttttgtttccataatgtttttagactatatatgatctaatttatatatgggttgatgtaaaggattttt |
38884798 |
T |
|
| Q |
494 |
agacgagttatatctcggagacttgccaggacagatctcaaggtttacggagcatttagaaagatacttatatattacacattaacaaggtctttacacc |
593 |
Q |
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||||||||||||||||| ||| | ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
38884799 |
agacgagttatatctcgaagattagccaggacagatctcaaggtttagagagcatttaaaaagatacttataaattacacatcaacaaggtctttacacc |
38884898 |
T |
|
| Q |
594 |
gacaacagacgttaaacctacgcacttgtatgatttgagctgcaatcaacaatatccgtgatcgtttgttatagaaactctcactacatagttgttattt |
693 |
Q |
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| T |
38884899 |
gacaacagacgttaaacctacgcacttgtatgatttgagctgcaatcaacaatatccgtgattgtttgttatagaaactctcactacatagttgttattt |
38884998 |
T |
|
| Q |
694 |
ttgttagtaaggggagtgaaattcatgggtctcatatcatgaagtttttatgtttcttgtaaacaataagtcaccttatcaattattgagttttaagcaa |
793 |
Q |
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| T |
38884999 |
ttgttagtgaggggagtgaaattcat-ggtctcatatcatgaagtttttatgtttcttgtaaacaataagtcaccttatcaattattgagttttaagcaa |
38885097 |
T |
|
| Q |
794 |
caaagagttatctccgacacacttatatttaaaattaaccaagtgtgctacatgttgaggttaacctctatatatacaaacaggagaaattagttgcact |
893 |
Q |
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| T |
38885098 |
caaagagttatctccgacacacttatatttaaaa-taaccaagtgtgttacatgttgagtttaacctctatatatacaaaca-gagaaattagttgcact |
38885195 |
T |
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| Q |
894 |
aaaaagaaatttatatc |
910 |
Q |
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|||||| |||||||||| |
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| T |
38885196 |
aaaaag-aatttatatc |
38885211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 39158839 - 39158779
Alignment:
| Q |
31 |
gtgttgctttcttgttggactgtcaatttcttgattttgtttcataggtttgaacatgtct |
91 |
Q |
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| T |
39158839 |
gtgttgcttcctagttggactgtcaatttcttgattttgtttgataagtttgaacatgtct |
39158779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 39480870 - 39480976
Alignment:
| Q |
117 |
atgtagtcatgtgtacttttgtagcgttatta-tgttatataaattaaattttaagtcattctttttggtggatgaatagtgataatagcagtgttttaa |
215 |
Q |
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||||||| |||||||||| ||||| |||| || ||||| ||||| |||||| | |||||||||||||| |||| |||||||||||||||| | ||||| |
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| T |
39480870 |
atgtagtaatgtgtacttgtgtagtgttagtactgttacgtaaataaaatttgatgtcattctttttgggggataaatagtgataatagca-tcgtttaa |
39480968 |
T |
|
| Q |
216 |
aaaccgga |
223 |
Q |
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| T |
39480969 |
aaaccgga |
39480976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 39482377 - 39482435
Alignment:
| Q |
33 |
gttgctttcttgttggactgtcaatttcttgattttgtttcataggtttgaacatgtct |
91 |
Q |
| |
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||||||| || ||||||||||||||||||||||| ||||| ||| |||| ||||||||| |
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| T |
39482377 |
gttgcttcctagttggactgtcaatttcttgattgtgtttgataagtttaaacatgtct |
39482435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 39158732 - 39158668
Alignment:
| Q |
171 |
gtcattctttttggtggatgaatagtgataatagcagtgttttaaaaaccggatatggtcgaacca |
236 |
Q |
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| T |
39158732 |
gtcattctttttgggggataaatagtgataatagca-tcgtttaaaaaccggacatggtcaaacca |
39158668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 19810739 - 19810643
Alignment:
| Q |
45 |
ttggactgtcaatttcttgattttgtttcataggtttgaacatgtctttcaacaatcaagcacatgtgatgtatgtagtcatgtgtacttttgtagcgtt |
144 |
Q |
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| T |
19810739 |
ttggactgtcaatttcttgattttgtttgataagtttgaacatgtctttcaacaatcaaaaacatgt----aatgtagtcatgtgtacttttgtagcgtt |
19810644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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