View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785-Insertion-4 (Length: 515)
Name: NF4785-Insertion-4
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 44 - 515
Target Start/End: Original strand, 4223192 - 4223669
Alignment:
| Q |
44 |
tattcaacatttaatcttcttttttcttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaatt |
143 |
Q |
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|||| ||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
4223192 |
tatttaacatttaatctt--ttttcctaatatatttgtttcttc-ctcaaaacttttgcggttaaaatagcaaagctaaggcctcagataaacctcaatt |
4223288 |
T |
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| Q |
144 |
atgttataa-----ctaccaaatataatctaaaaggctcatcaaattttttatgtcaatttcattacaattggttattccacttaaaattttagctgcac |
238 |
Q |
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| T |
4223289 |
atgttataaattaactaccaaatacaaactaaaaggctcatgaaattttttatgtaaatttcattacaattggttattccactcaaaattttagctgcac |
4223388 |
T |
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| Q |
239 |
tttttatgtgctagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaa-cacaatcaattaccactaagcttttttagcttc |
337 |
Q |
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| T |
4223389 |
tttttatgtactagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaattacaatcaattaccactaagcttttttagcttc |
4223488 |
T |
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| Q |
338 |
atatatgtccacca--aaccgcaaaccctatcccatttctattatcatactatttattccttctttttaattaatataagaataatctagtcaatatcac |
435 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4223489 |
atatatgtccaccatcaaccgaaaaccctatcccatttctattataatactatttattccttctttttaattaatataagaaaaatctagtcaatatcac |
4223588 |
T |
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| Q |
436 |
cttaaaccacaacaaaaaaggaaaatcaaaagtgatgttaatt-aacaatatgattcacacacaatcttcaaatttgtgag |
515 |
Q |
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| T |
4223589 |
cttaaaccacaacataaaaggaaaatcaaaagtgatattaattaaacactatgattcacacacaatcttcaaatttgtgag |
4223669 |
T |
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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 43002819 - 43002701
Alignment:
| Q |
45 |
attcaacatttaatcttctttttt--cttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaat |
142 |
Q |
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||||||| || ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43002819 |
attcaaccttcaatcttctttttttccttatatatttgtttcttc-ctcaatacttttgcggttacaactgcaaagctaaaggctcagataagcctcaat |
43002721 |
T |
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| Q |
143 |
tatgttataactaccaaata |
162 |
Q |
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||||||||||||| |||||| |
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| T |
43002720 |
tatgttataactagcaaata |
43002701 |
T |
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