View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4785-Insertion-5 (Length: 412)

Name: NF4785-Insertion-5
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4785-Insertion-5
NF4785-Insertion-5
[»] chr7 (9 HSPs)
chr7 (20-410)||(33902213-33902603)
chr7 (300-408)||(24211326-24211434)
chr7 (270-408)||(46603696-46603832)
chr7 (315-408)||(9603484-9603577)
chr7 (315-408)||(9831055-9831148)
chr7 (315-397)||(4040862-4040948)
chr7 (311-371)||(45996484-45996544)
chr7 (300-344)||(3399435-3399479)
chr7 (329-401)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (270-408)||(13360-13498)
[»] chr8 (6 HSPs)
chr8 (270-408)||(25267030-25267168)
chr8 (298-408)||(2233868-2233978)
chr8 (300-408)||(32162764-32162870)
chr8 (301-408)||(39907939-39908046)
chr8 (301-362)||(17072689-17072750)
chr8 (301-362)||(17575521-17575582)
[»] chr3 (16 HSPs)
chr3 (271-408)||(41242179-41242316)
chr3 (311-408)||(16041133-16041230)
chr3 (311-408)||(16053073-16053170)
chr3 (270-408)||(11076939-11077076)
chr3 (311-408)||(16037577-16037674)
chr3 (300-400)||(17517888-17517988)
chr3 (271-397)||(37820798-37820924)
chr3 (311-408)||(39933347-39933443)
chr3 (306-405)||(9821003-9821102)
chr3 (300-408)||(28389387-28389501)
chr3 (265-408)||(31229723-31229866)
chr3 (304-408)||(5050593-5050697)
chr3 (300-337)||(34730789-34730826)
chr3 (300-388)||(50744732-50744820)
chr3 (300-337)||(34870135-34870172)
chr3 (353-409)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (300-408)||(12185707-12185815)
chr6 (301-408)||(9456209-9456316)
chr6 (300-408)||(3441218-3441326)
chr6 (300-408)||(10068183-10068289)
chr6 (300-392)||(25070402-25070494)
chr6 (360-409)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (301-408)||(3067606-3067713)
chr4 (301-408)||(5050426-5050533)
chr4 (312-400)||(4059118-4059206)
chr4 (302-374)||(31040283-31040356)
chr4 (300-391)||(43967986-43968077)
chr4 (306-408)||(18371146-18371248)
chr4 (304-374)||(36622116-36622186)
chr4 (300-408)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (300-408)||(25808484-25808592)
chr1 (272-408)||(46298512-46298648)
chr1 (300-408)||(31501054-31501162)
chr1 (301-383)||(19339915-19339997)
chr1 (300-407)||(49423341-49423448)
chr1 (300-408)||(23392714-23392823)
chr1 (329-408)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (305-408)||(2126184-2126287)
chr2 (301-390)||(11152190-11152279)
chr2 (303-365)||(22348730-22348792)
chr2 (303-374)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (302-408)||(35075847-35075954)
chr5 (311-396)||(31559096-31559181)
chr5 (300-353)||(5150835-5150888)
chr5 (300-407)||(10020725-10020829)
chr5 (347-408)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (301-383)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (300-408)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 33902603 - 33902213
Alignment:
Q  20 ggaattggagaggaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcgatggttttgagtcaaatatcaatcgttagcatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33902603 ggaattggagaggaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcaatggttttgagtcaaatatcaatcgttagcatt 33902504  T
Q  120 atttaaagatgttattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatattaatcaacaatggtattgaatgaacatcaaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33902503 atttaaagatgttattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatattaatcaacaatggtatcgaatgaacatcaaaa 33902404  T
Q  220 agttgattctacttggatttatttcaacacaccatataagaatacaatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaa 319  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||| ||||| |||||||||||| |    
T  33902403 agttgattctacttgcatttatttcaacacaccatacaagaatccaatgagaaatgctaacttatgccctgaaggcaaaagttaaaaaattaaagataga 33902304  T
Q  320 aatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttcg 410  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  33902303 aatattttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccatttttcg 33902213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 24211434 - 24211326
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||  |||||||  |||| | ||||| |||| |||||||||||||||||||    
T  24211434 gttaagaaatcaaagatagaaatattttgttggaaattgtgtattcaatattcaagaaattggaaatctaatcttttcaaaacataatttatgatttaat 24211335  T
Q  400 tccattttt 408  Q
    || ||||||    
T  24211334 tctattttt 24211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 408
Target Start/End: Original strand, 46603696 - 46603832
Alignment:
Q  270 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 369  Q
    ||||||||||||| || ||| || ||||| ||||||||| |||||||| |||  |||| ||||||||| ||||||  || ||||||||||||||||| ||    
T  46603696 gaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgttttagaaatttaaaatctt 46603795  T
Q  370 atcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||| |||||||  |||||||  |||||||||||||||    
T  46603796 atcttttcaagac--aatttatattttaattccattttt 46603832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 9603484 - 9603577
Alignment:
Q  315 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9603484 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9603577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 9831055 - 9831148
Alignment:
Q  315 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9831055 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 4040862 - 4040948
Alignment:
Q  315 ataaaaatattttgttggaaattatgcattcaat----attttagaaatttaaaattttatcttatcaagacataatttatgattta 397  Q
    ||||||| ||||||||||||||| ||||||||||    ||| ||||| |||||||| ||||||| |||||||| |||||||||||||    
T  4040862 ataaaaacattttgttggaaattgtgcattcaatcaatattctagaattttaaaatattatcttttcaagacaaaatttatgattta 4040948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 45996484 - 45996544
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 371  Q
    ||||||||||||||||| ||| ||||| || ||| |||||| || ||||||||||||||||    
T  45996484 aaagataaaaatattttattgtaaattgtgtatttaatattctaaaaatttaaaattttat 45996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 3399479 - 3399435
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcatt 344  Q
    |||||||||||||| |||||| | |||||||||||||| ||||||    
T  3399479 gttaagaaattaaatataaaagttttttgttggaaattttgcatt 3399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 30003801 - 30003873
Alignment:
Q  329 ttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattc 401  Q
    |||||||||||| ||||||||| ||| ||| ||||||  |||| || |||| ||| |||||||| ||||||||    
T  30003801 ttggaaattatgtattcaatatcttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattc 30003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 408
Target Start/End: Original strand, 13360 - 13498
Alignment:
Q  270 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 369  Q
    |||||| |||||| ||| || || ||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  13360 gaaatgttaacttgtgttctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatctt 13459  T
Q  370 atcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  13460 atcttttcaagacataatttatgatttaattgcattttt 13498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 25267168 - 25267030
Alignment:
Q  270 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 369  Q
    |||||| |||||| || ||| |||||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||    
T  25267168 gaaatgttaacttctgccctcaaagcataagttaagaaaccaaagatagaaacattttgttggaaattgtgcattcgatattatagaaatttaaaatctt 25267069  T
Q  370 atcttatcaagacataatttatgatttaattccattttt 408  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  25267068 atcatttcaagacataatttatgatttaattccattttt 25267030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 2233978 - 2233868
Alignment:
Q  298 aggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattta 397  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||||||||||    
T  2233978 aggttaaaaaaccaaagataaaagtattttgttggaaattatgcattcaatattctaaaaatttaaaattttatcttttcaaaacaaaatttatgattta 2233879  T
Q  398 attccattttt 408  Q
    |||| ||||||    
T  2233878 attctattttt 2233868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 32162764 - 32162870
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    |||||||||| ||| ||||||| |||||||| ||| || || || ||||||||||||||| |||||| |||| || |||| | | |||||||||||||||    
T  32162764 gttaagaaatcaaaaataaaaacattttgttcgaa-ttgtgtat-caatattttagaaatgtaaaatcttatattttcaaaataaaatttatgatttaat 32162861  T
Q  400 tccattttt 408  Q
    |||||||||    
T  32162862 tccattttt 32162870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 408
Target Start/End: Original strand, 39907939 - 39908046
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    |||| ||| |||||||| ||||||||| | | | ||||||||||  |||||||||||||||||||| ||||||| | || | | |||||||| |||||||    
T  39907939 ttaaaaaactaaagatataaatattttatagaatattatgcatttcatattttagaaatttaaaatgttatctttttaaaataaaatttatgttttaatt 39908038  T
Q  401 ccattttt 408  Q
     |||||||    
T  39908039 tcattttt 39908046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 17072689 - 17072750
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 362  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17072689 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17072750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 17575582 - 17575521
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 362  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17575582 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 271 - 408
Target Start/End: Complemental strand, 41242316 - 41242179
Alignment:
Q  271 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 370  Q
    ||||| ||||||||| ||| || ||| | |||||||||  ||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||| |||    
T  41242316 aaatgttaacttatgccctcaaggcacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatctta 41242217  T
Q  371 tcttatcaagacataatttatgatttaattccattttt 408  Q
    |||| ||| |||||||||||||||||||||| ||||||    
T  41242216 tcttttcaggacataatttatgatttaattctattttt 41242179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 16041133 - 16041230
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  16041133 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccattttt 16041230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 16053073 - 16053170
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  16053073 aaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccaatttt 16053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 11077076 - 11076939
Alignment:
Q  270 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 369  Q
    ||||||||||||| |||| | || ||| | |||||||||| ||||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||| ||    
T  11077076 gaaatgctaacttgtgtcgttaaggcacaagttaagaaatcaaagatagaaacattt-gttggaaattgtgcaatcaatattttagaaatttaaaatctt 11076978  T
Q  370 atcttatcaagacataatttatgatttaattccattttt 408  Q
    || || |||||||| |||||||| |||||||||||||||    
T  11076977 atattttcaagacaaaatttatgttttaattccattttt 11076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 16037577 - 16037674
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  16037577 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttgtgatttaattccattttt 16037674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 17517988 - 17517888
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||||| || ||||||||| | ||||||| |||||| |||||||||||||||||    
T  17517988 gttaagaaatcaaagatagaaatattttgttagaaattgtgcattcaatattctaaaaatttaaattcttatcttttcaagatataatttatgatttaat 17517889  T
Q  400 t 400  Q
    |    
T  17517888 t 17517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 37820924 - 37820798
Alignment:
Q  271 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 370  Q
    ||||| ||||||||| ||| ||| || | ||||| ||| |||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||    
T  37820924 aaatgttaacttatgcccttaaaacacaagttaataaactaaatataaaaatattttattggaaattatgcattccatgttttagaaatttaaaatctta 37820825  T
Q  371 tcttatcaagacataatttatgattta 397  Q
    |||| | ||||||  ||||||| ||||    
T  37820824 tctttttaagacaatatttatgtttta 37820798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 39933347 - 39933443
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    |||||||||||  |||||||| ||||| ||||||||||||| || |||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  39933347 aaagataaaaaatttttgttgaaaattgtgcattcaatattctaaaaattt-aaattttatcttttcaaaacacaatttatgatttaattctattttt 39933443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 405
Target Start/End: Complemental strand, 9821102 - 9821003
Alignment:
Q  306 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 405  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||| |  |||||| |||| ||||||| |||| ||||||||||| ||| |||||||||    
T  9821102 aaattaaagatagaaatattttgttagaaattgtgcattcaagattctgaaaattttaaatcttatcttttcaaaacataatttataattcaattccatt 9821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 28389387 - 28389501
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttag------aaatttaaaattttatcttatcaagacataatttatga 393  Q
    |||||||||  ||||||||||||||||||||||||||| | |||| ||| || |||      ||||||||||| ||||||| |||||| |||||||||||    
T  28389387 gttaagaaaccaaagataaaaatattttgttggaaattgtacatttaatgttctagtcctataaatttaaaatattatcttttcaagatataatttatga 28389486  T
Q  394 tttaattccattttt 408  Q
    |||||||| ||||||    
T  28389487 tttaattctattttt 28389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 408
Target Start/End: Complemental strand, 31229866 - 31229723
Alignment:
Q  265 aatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaa 364  Q
    |||| |||||| ||| || || ||| |||||| | ||||||| |||| | ||| ||| ||||| ||||||||| | ||||| || |||||||||||||||    
T  31229866 aatgggaaatgttaatttgtgcccttaaagcataagttaagagattacatatagaaacattttattggaaattgtacattctatgttttagaaatttaaa 31229767  T
Q  365 attttatcttatcaagacataatttatgatttaattccattttt 408  Q
    || ||||  | |||||| |||||||||| |||| ||| ||||||    
T  31229766 atcttatgatttcaagatataatttatgttttacttctattttt 31229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 5050697 - 5050593
Alignment:
Q  304 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattcca 403  Q
    |||| ||||| ||| ||||||||| ||  ||||| |||||||||||| ||| |||||||||||||| |||| |||| ||| || |||   ||||||||||    
T  5050697 agaagttaaacatagaaatattttcttaaaaattgtgcattcaatatattaaaaatttaaaattttgtcttttcaatacaaaagttacattttaattcca 5050598  T
Q  404 ttttt 408  Q
    |||||    
T  5050597 ttttt 5050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 34730826 - 34730789
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaatt 337  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  34730826 gttaagaaactaaagataaaaatattttgttggaaatt 34730789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 50744820 - 50744732
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatt 388  Q
    ||||||||| |||||||| ||||||||| ||  ||||| ||||||  |||||||| ||||||||||| ||| ||| || ||||| ||||    
T  50744820 gttaagaaactaaagatataaatattttattaaaaattgtgcatttcatattttaaaaatttaaaatcttaacttctctagacaaaatt 50744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 34870172 - 34870135
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaatt 337  Q
    |||||||||  |||||||||||||||||||||||||||    
T  34870172 gttaagaaaccaaagataaaaatattttgttggaaatt 34870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 6276753 - 6276809
Alignment:
Q  353 tagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttc 409  Q
    ||||||||| |||| |||| || |||||||||||||||| ||||||||  |||||||    
T  6276753 tagaaattttaaatcttatattttcaagacataatttataatttaattatatttttc 6276809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 12185815 - 12185707
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||||||| |||| ||| ||||||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  12185815 gttaagaaactaaaaatagaaatattttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaagacataatttatgatttaat 12185716  T
Q  400 tccattttt 408  Q
    |||||||||    
T  12185715 tccattttt 12185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 408
Target Start/End: Complemental strand, 9456316 - 9456209
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |||| || |||||||||||||||| ||||||||    
T  9456316 ttaagaaatcaaagatagaaatattttgttggaaattgtgcattcaatagtctagaaatttaaaatcttatattttcaagacataatttataatttaatt 9456217  T
Q  401 ccattttt 408  Q
    ||||||||    
T  9456216 ccattttt 9456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 3441326 - 3441218
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||| |||||||||||| ||| ||||| | ||||||| ||||||  ||||||||||| |||||||| |||| || |||||| | |||||||| ||||||    
T  3441326 gttaaaaaattaaagatagaaacattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaagataaaatttatgttttaat 3441227  T
Q  400 tccattttt 408  Q
    | |||||||    
T  3441226 ttcattttt 3441218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 10068183 - 10068289
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||||||| |||| ||| ||||||||| |||||  || ||||||  || ||||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  10068183 gttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttaaaattttattctgtcaagacaaaatttatgttttaat 10068280  T
Q  400 tccattttt 408  Q
    | |||||||    
T  10068281 ttcattttt 10068289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 392
Target Start/End: Complemental strand, 25070494 - 25070402
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatg 392  Q
    ||||| ||| |||||||| ||| ||||| ||  ||||| || |||  |||||||||||||||||||| ||||||| | |||||| ||||||||    
T  25070494 gttaaaaaactaaagatataaacattttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttatg 25070402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 10483464 - 10483415
Alignment:
Q  360 ttaaaattttatcttatcaagacataatttatgatttaattccatttttc 409  Q
    ||||||| |||| || |||||||| |||||||| ||||||||||||||||    
T  10483464 ttaaaatcttatattttcaagacaaaatttatgttttaattccatttttc 10483415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 408
Target Start/End: Complemental strand, 3067713 - 3067606
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    ||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  3067713 ttaagaaaccaaagatagaaacattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaagaaataatttatgatttaatt 3067614  T
Q  401 ccattttt 408  Q
     |||||||    
T  3067613 tcattttt 3067606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 408
Target Start/End: Original strand, 5050426 - 5050533
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||||| ||||||| |  || |||||||||||||||||||    
T  5050426 ttaagaaaccaaagataaaaacattttattgaaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgaggcataatttatgatttaatt 5050525  T
Q  401 ccattttt 408  Q
    | ||||||    
T  5050526 ctattttt 5050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 4059206 - 4059118
Alignment:
Q  312 aagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    |||||||||| ||||| || |||||| || |||  |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  4059206 aagataaaaacattttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 31040283 - 31040356
Alignment:
Q  302 taagaaattaaagataaaaatattttgttggaaattatgcat-tcaatattttagaaatttaaaattttatctt 374  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| |||||||    
T  31040283 taagaaattaaatataaaaatattttattggaaattatgcatattaatgttttagaaatttaaaatcttatctt 31040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 43968077 - 43967986
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttat 391  Q
    |||||||||  ||||||| ||| ||||||||| ||||| |||||| |||||| || |||||| |||| ||||||| ||||||||||||||||    
T  43968077 gttaagaaaccaaagatagaaacattttgttgaaaattgtgcatttaatattctaaaaattttaaatcttatcttttcaagacataatttat 43967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 408
Target Start/End: Original strand, 18371146 - 18371248
Alignment:
Q  306 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 405  Q
    |||||||||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| || | |||| | |||||||  ||||||||| ||    
T  18371146 aaattaaagatagaaatattttataggaaattgtgcattctatattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttt 18371245  T
Q  406 ttt 408  Q
    |||    
T  18371246 ttt 18371248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 36622186 - 36622116
Alignment:
Q  304 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 374  Q
    ||||| |||| ||| ||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  36622186 agaaagtaaacatataaacatttttttggaaattgtgcattcaatatattaaaaatttaaaattttatctt 36622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 45891795 - 45891904
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatc-aagacataatttatgatttaa 398  Q
    |||||||||  |||| || ||| ||||||||||| ||| |||||||||| |  || ||||||||||| |||| || || |||||| || |||||||||||    
T  45891795 gttaagaaaccaaagttagaaacattttgttggagattgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaa 45891894  T
Q  399 ttccattttt 408  Q
    ||| ||||||    
T  45891895 ttctattttt 45891904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 25808592 - 25808484
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    |||||||||  |||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||    
T  25808592 gttaagaaaccaaagataaaaatattttgttagaaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaat 25808493  T
Q  400 tccattttt 408  Q
    |||||||||    
T  25808492 tccattttt 25808484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 272 - 408
Target Start/End: Original strand, 46298512 - 46298648
Alignment:
Q  272 aatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 371  Q
    |||||||||||||||||| ||  || | |||||||||  ||||||||||| ||||||||||||||| |  |||||||||| |||||||||||||| ||||    
T  46298512 aatgctaacttatgtccttaagacacaagttaagaaaccaaagataaaaacattttgttggaaattgtatattcaatattatagaaatttaaaatcttat 46298611  T
Q  372 cttatcaagacataatttatgatttaattccattttt 408  Q
    ||| ||||||||  ||||||| |||||||| ||||||    
T  46298612 cttttcaagacaacatttatgttttaattctattttt 46298648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 31501162 - 31501054
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||| |||| ||||||| ||| || |||||||||||| |||||| ||| || |||||||||||||| ||||||| |||| ||| || ||||||||||||    
T  31501162 gttaaaaaatcaaagatagaaacatattgttggaaattgtgcatttaatgttctagaaatttaaaatcttatcttttcaaaacaaaaattatgatttaat 31501063  T
Q  400 tccattttt 408  Q
    | |||||||    
T  31501062 ttcattttt 31501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 19339915 - 19339997
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 383  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  19339915 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 19339997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 49423341 - 49423448
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||| |||||||| ||||||||||||| ||| ||||| ||||||  || ||||| ||||||||||| ||||||| | |||| |  ||||||| ||||||    
T  49423341 gttaataaattaaacataaaaatattttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttatctttttaagataatatttatgttttaat 49423440  T
Q  400 tccatttt 407  Q
    || |||||    
T  49423441 tctatttt 49423448  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 23392823 - 23392714
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattt-aaaattttatcttatcaagacataatttatgatttaa 398  Q
    |||||||||||||| ||  ||||||||| ||  ||||| |||||| ||||||||| || ||| ||||| |||| || | |||| | |||||||  |||||    
T  23392823 gttaagaaattaaaaattgaaatattttatttaaaattgtgcatttaatattttaaaattttaaaaatcttatatttttaagataaaatttattttttaa 23392724  T
Q  399 ttccattttt 408  Q
    ||||||||||    
T  23392723 ttccattttt 23392714  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 408
Target Start/End: Original strand, 51540737 - 51540817
Alignment:
Q  329 ttggaaattatgcattcaatattttagaaa-tttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    ||||||||| || ||||| ||||||| ||| ||||||||||||| || | ||| || || ||||| |||||||||||||||    
T  51540737 ttggaaattgtgtattcattattttaaaaagtttaaaattttattttgttaagtcaaaacttatgttttaattccattttt 51540817  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 2126287 - 2126184
Alignment:
Q  305 gaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccat 404  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  |||| || ||||||||| |||||||||||||||||||    
T  2126287 gaaactaaagatagaaatattttgttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaagacatgatttatgatttaattccat 2126188  T
Q  405 tttt 408  Q
    ||||    
T  2126187 tttt 2126184  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 11152190 - 11152279
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataattta 390  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  11152190 ttaagaaatcaaagatgaaaatattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttctcaagacataattta 11152279  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 22348792 - 22348730
Alignment:
Q  303 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaa 365  Q
    |||||| |||| ||||||||||||| ||| ||||| |||||||||||||||| || |||||||    
T  22348792 aagaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaagtttaaaa 22348730  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 22345757 - 22345686
Alignment:
Q  303 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 374  Q
    ||||||||||| ||  || |||||| || |||||| |||||||||||||||| | |||||||| ||||||||    
T  22345757 aagaaattaaatatttaagtattttctttgaaattgtgcattcaatattttaaacatttaaaaatttatctt 22345686  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 302 - 408
Target Start/End: Original strand, 35075847 - 35075954
Alignment:
Q  302 taagaaattaaagataaaaatatttt-gttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 400  Q
    ||||||| |||||||| ||| ||||| |||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||||||||    
T  35075847 taagaaactaaagatataaacatttttgttgaaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacaaaaattatgatttaatt 35075946  T
Q  401 ccattttt 408  Q
    | ||||||    
T  35075947 ctattttt 35075954  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 31559181 - 31559096
Alignment:
Q  311 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattt 396  Q
    ||||||| ||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||| || |||||||||||||||| ||||    
T  31559181 aaagatagaaacattttgttggacattgtgcatttagtattttagcaatttaaaattttatgttttcaagacataatttattattt 31559096  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 5150835 - 5150888
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatatttt 353  Q
    ||||||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  5150835 gttaagaagctaaagattaaaatattttcttgaaaattatgcattcaatatttt 5150888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 10020725 - 10020829
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||| |||||||| ||| ||||||||||   |||||  | ||||| || |||||||||||||||| ||||| || ||||||||  |||| || ||||||    
T  10020725 gttaataaattaaatatagaaatattttg---gaaatcgttcattctatgttttagaaatttaaaaatttatattttcaagacaatatttttgttttaat 10020821  T
Q  400 tccatttt 407  Q
    ||||||||    
T  10020822 tccatttt 10020829  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 7802030 - 7802090
Alignment:
Q  347 atattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 408  Q
    |||||||||||||||||||||||||||| | |||||| |||||    |||||||||||||||    
T  7802030 atattttagaaatttaaaattttatctt-ttaagacaaaatttgcattttaattccattttt 7802090  T

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Target: scaffold0402 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 2978 - 3060
Alignment:
Q  301 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 383  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  2978 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 3060  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 365 - 473
Alignment:
Q  300 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 399  Q
    ||||||| |||||| ||  ||||||||||||  ||||| |||||| ||||||||| || |||||||| |||| || | |||| | |||||||  ||||||    
T  365 gttaagatattaaaaattgaaatattttgttcaaaattgtgcatttaatattttaaaattttaaaatcttatatttttaagataaaatttattttttaat 464  T
Q  400 tccattttt 408  Q
    | |||||||    
T  465 ttcattttt 473  T

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