View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4785_high_1 (Length: 707)
Name: NF4785_high_1
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 20 - 696
Target Start/End: Complemental strand, 8187548 - 8186872
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8187548 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctatggagtttacaaggtgagaatacagtcatgcct |
8187449 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8187448 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
8187349 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8187348 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
8187249 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
419 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8187248 |
atttttccaagatattatgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
8187149 |
T |
|
| Q |
420 |
tgttgtgttacagatgacaatggcatgcctagtatgtctgaacgaacccgccatctttcaaattatatgttgaaatctttcaatgaagtcgattcagtgc |
519 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8187148 |
tgttgtgttacaaatgacaatggcatgcctagtatgtctgaacgaacccgccatctttcaaattataggttgaaatctttcaatgaagtcgattcagtgc |
8187049 |
T |
|
| Q |
520 |
aagtttgtttctgcatatccataacatgttcaaggagccatgatgccacaacaaatattcaatgtatgtttgatttgtgtccaaggatccaagacgccaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8187048 |
aagtttgtttctgcatatccataacatgttcaaggagccatgatgccacaacaaatattcaatgtatgtttgatttgtgtccaaggatccaagacgccaa |
8186949 |
T |
|
| Q |
620 |
agcaaagacactatcaatctggttacctgctgccaaatcattaaagacttgtataatgcaagtgagtgctgatgatg |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8186948 |
agcaaagacactatcaatctggttacctgctgccaaatcattaaagacttgtataatggaagtgagtgctgatgatg |
8186872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 7053785 - 7053833
Alignment:
| Q |
283 |
ttggcaatgaggtatggaatgaattatattggagatcatttttccaaga |
331 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
7053785 |
ttggtaatgaggtatggaatgaattatatcaaagatcattttttcaaga |
7053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 480
Target Start/End: Complemental strand, 15347444 - 15346988
Alignment:
| Q |
24 |
ggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcctgcct |
123 |
Q |
| |
|
|||||| | ||||| |||||| |||| |||||||| |||| ||||||| ||||||||| || |||| |||||||||||||||| | ||||||||||| | |
|
|
| T |
15347444 |
ggaagtttattgcggtttaaacgagaagaaaaggaatggcgctatgtcaaggaaagtaagctatggaatttacaaggtgagaattctgtcatgcctgcgt |
15347345 |
T |
|
| Q |
124 |
tgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcctaat |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||||| | |||| || || || |||| |
|
|
| T |
15347344 |
tgagattaagttacttgaatttgccggtaaaattgagacaatgttttgccttttgtgcactatttcccaaggatgaaattataagcaaacagtttgtaat |
15347245 |
T |
|
| Q |
224 |
tgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatcattt |
323 |
Q |
| |
|
||| || |||||||||||||| |||||| ||||||||| ||| | ||||| || |||||||| ||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
15347244 |
tgagctttggatggctaatggatttattccatccaatggaatgttggaagcagaagatattggtaatgaagcatggaatgaattatattgtagatcattt |
15347145 |
T |
|
| Q |
324 |
ttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtttgtt |
423 |
Q |
| |
|
|| ||||||| ||||||||| |||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||| |
|
|
| T |
15347144 |
tttcaagatactcagacagatgattttggacaaattgtatatttcacgatgcatgatcttgttcatgatcttgctcaatctatcacagaagaggtctgtc |
15347045 |
T |
|
| Q |
424 |
gtgttacagatgacaatggcatgcctagtatgtctgaacgaacccgccatctttcaa |
480 |
Q |
| |
|
||||| |||| | |||||| ||||||||||||||| || ||||||||| |||| |
|
|
| T |
15347044 |
acattacaaatgatagtggcatacctagtatgtctgaaaaaatccgccatctctcaa |
15346988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 15357717 - 15357342
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| |||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||| |||||||| || |
|
|
| T |
15357717 |
actaggaagtttcttacgttttaaacgagaagaaaaggaatggcgctatgtcaaggaaagcaatctatggagtttacaaggtgagaattcagtcatgtct |
15357618 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| || || ||||||||||||||||||||| | || ||| || | |||| ||||| || |
|
|
| T |
15357617 |
tccttgaggttaagttacttgaatttgccggtaaaattgaggcagtgctttgccttttgtgcacttttttccaaggatcaaattataagtaagcagtttt |
15357518 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
15357517 |
tgattgagctttggatggctaatggatttatttcatccaatgaaatactggaagcacaagatatcggcaatgaggtgtggaatgaattatattgtagatc |
15357418 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatctt |
395 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
15357417 |
atttttccaagataccaagacaaatgaatttggaaaaattgtatctttcaagatgcatgatcttgttcatgatctt |
15357342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 15336075 - 15335612
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||| ||||||||||||||| |||||| || || ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
15336075 |
actaggaagtctcttgtgtttcaaaagagacgaaaatgagtggctctatgtcaaggaaagcaagctatggagtttacaaggtgataattcagtcatgcct |
15335976 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||||| ||||| |||||| || |||||| ||| || || | |
|
|
| T |
15335975 |
gccttgagactaagttatttgaatttaccagtaaaattgagacagtgttttgccttgtgtgcactctttcccaaagataaactaataagaaaacactttc |
15335876 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
|||| || || |||||||||||||| |||||||| || ||||||| | |||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15335875 |
taatagaactctggatggctaatggctttatttcttcaaatgaaaagttggaagatggtgatattggcaatgaggtgtggaatgaattatattggagatc |
15335776 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
419 |
Q |
| |
|
|||||| |||||||| | || |||| ||||||| |||| || |||||| |||||||||||||| |||||||||||||||| | | ||||||| || |
|
|
| T |
15335775 |
attttttcaagatattgagatagatcaatttgggaaaacta---gtttcaaaatgcatgatcttgttcatgatcttgctcaatatgttgcagaagaagta |
15335679 |
T |
|
| Q |
420 |
tgttgtgttacagatgacaatggcatgcctagtatgtctgaacgaacccgccatctttcaaattata |
486 |
Q |
| |
|
|| | | ||||||||||||| ||||||||| ||||||| ||| |||||| || |||| ||||| |
|
|
| T |
15335678 |
tgctccatcacagatgacaatgatgtgcctagtacgtctgaaagaatccgccacctctcaatttata |
15335612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 15083396 - 15082992
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||| || || ||||||||||||| ||| || | ||||||| |
|
|
| T |
15083396 |
actaggaagtctcttgcgctttaaaacagaggaaaaagagtggcactatgtgaaggaaagcaaactatggagtttacaagatgaagattatgccatgcct |
15083297 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||| | ||| ||||||||||||||||||| |||||||| ||||| ||||||| | |||||| ||||| || | |
|
|
| T |
15083296 |
gcgttgagattaagttacttgaatttgccgcttaaactgagacaatgttttgccttctgtgcactatttcccaaagatgcaataataaggaagcagtttc |
15083197 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
||||||| || |||||||||||||| |||||||| |||||| |||| | || | || ||||| | |||||| || ||||||||||||||||| ||||| |
|
|
| T |
15083196 |
taattgagctttggatggctaatggctttatttcgtccaataaaatattggacgaagaagatatcgacaatgatgtgtggaatgaattatattgtagatc |
15083097 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
419 |
Q |
| |
|
|||||| |||||||| | |||||||| |||||| ||||||| | |||||||||||| |||||||| || |||||||||||||| || ||||| ||||| |
|
|
| T |
15083096 |
attttttcaagatattgagacagatgtatttggcaaaattacaagtttcaagatgcacgatcttgttcacgatcttgctcaatcaatttcagatgaggtg |
15082997 |
T |
|
| Q |
420 |
tgttg |
424 |
Q |
| |
|
||||| |
|
|
| T |
15082996 |
tgttg |
15082992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 22 - 419
Target Start/End: Complemental strand, 16414438 - 16414041
Alignment:
| Q |
22 |
taggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcctgc |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||| || || ||| ||||||||||||||| ||||||||||| |
|
|
| T |
16414438 |
taggaagtctcttgcgtttcaaaagagaggaaatagagtggctcaatgtcaaggaaagcaagctatgggatttacaaggtgagaactgcgtcatgcctgc |
16414339 |
T |
|
| Q |
122 |
cttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattccta |
221 |
Q |
| |
|
||| || ||||||||||||||||| ||| | |||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||| ||| | || | |
|
|
| T |
16414338 |
cttaaggttaagttacttgaatttaccagttaaattgagacaatgtttttccttctgtgcactatttcccaaagatgaaataataaacaagaagtttttg |
16414239 |
T |
|
| Q |
222 |
attgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatcat |
321 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||||||||| || || || | || ||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
16414238 |
attgacctttggatggcaaatggttttctttcatccaatgctatgttacaaacagaagatattggcaatgaggtgtggaatgagttatattggagatcat |
16414139 |
T |
|
| Q |
322 |
ttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
419 |
Q |
| |
|
|||| |||||||| | | |||| ||||||||||||| | | ||||| ||||| || ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
16414138 |
tttttcaagatattgagcatgatggatttggaaaaattcaaaaattcaaaatgcacgaccttgtacatgatcttgctcaatccattacagaagaggtt |
16414041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 15331623 - 15331261
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||| || | ||||||||||||| ||| || ||||||||| |
|
|
| T |
15331623 |
actaggaagtctcttgcgttttaaaagagaggtaaatgagtggcactatgtcaaggaaagcaaattatggagtttacaagatgaagattatgtcatgcct |
15331524 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| || ||| ||||||||| ||||| ||| | || | |
|
|
| T |
15331523 |
accttgagattaagttacttgaatttgccagtaaaattgagacaatgctttgccttctgtgctctatttatcaaagatgaaagaataagtaagaagtttc |
15331424 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
||||||| || |||||||||||||| || ||||||| |||||||| | || | || ||||||||||||| ||| |||||||||||||| | |||||| |
|
|
| T |
15331423 |
taattgagctttggatggctaatggcttggtttcatctaatgaaatgttggacgaggaagatattggcaatggggtgtggaatgaattatacttgagatc |
15331324 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatct |
382 |
Q |
| |
|
||||||||||||||| | ||||||| |||||| ||||||| | |||||||||||||||||| |
|
|
| T |
15331323 |
atttttccaagatattgagacagatatatttggcaaaattacaagtttcaagatgcatgatct |
15331261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 15429257 - 15429661
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||| || | |||| |||||||| ||| | | ||||||||| |
|
|
| T |
15429257 |
actaggaagtctcttgcgctttaaaagagaggaaaaggagtggcgctatatcaaggaaagcaaaatatggaatttacaagatgaagaaaatgtcatgcct |
15429356 |
T |
|
| Q |
120 |
gccttgagattaagtt-acttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattc |
218 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| | ||| ||||||||||||||||||| |||||| | ||||| ||||||||| ||||| ||||| || |
|
|
| T |
15429357 |
gcattgagattaagtttacttgaatttgccagttaaactgagacaatgttttgccttctgtgcattatttcccaaagatgaaagaataagtaagcagtta |
15429456 |
T |
|
| Q |
219 |
ctaattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagat |
318 |
Q |
| |
|
|||||| | || ||||||||||||| |||||||| ||||||||||| | || | || ||||| | ||||| || ||||||||| |||||||||||| |
|
|
| T |
15429457 |
ctaattcagctttggatggctaatgactttatttcttccaatgaaatgttggacgaggaagatatcgcgaatgatgtgtggaatgaaatatattggagat |
15429556 |
T |
|
| Q |
319 |
catttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggt |
418 |
Q |
| |
|
| ||||| |||||| | | || ||||| |||||| |||||||| |||||||||||| |||||||| |||||||| ||||| || || ||||||||||| |
|
|
| T |
15429557 |
ccttttttcaagattttgagagagatgtatttggcgaaattataagtttcaagatgcacgatcttgttcatgatctcgctcagtcaatttcagaagaggt |
15429656 |
T |
|
| Q |
419 |
ttgtt |
423 |
Q |
| |
|
|||| |
|
|
| T |
15429657 |
gtgtt |
15429661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 16403707 - 16403329
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtga-gaatacagtcatgcc |
118 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||| || ||||||||| ||||||| || ||| |||| | | |
|
|
| T |
16403707 |
actaggaagtcttttgcggtttaaaagagaagaaaaagagtggctctatgtgaaggaaagtaagctatggagtttagaaggtgaagattac-gtcaagtc |
16403609 |
T |
|
| Q |
119 |
tgccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattc |
218 |
Q |
| |
|
|||||| | | |||||||| | ||||||||| ||||||||||||| |||||| ||||||||||| | ||||| ||||||||| | || | ||||| ||| |
|
|
| T |
16403608 |
tgccttaaaactaagttacctcaatttgccagtaaaattgagacagtgtttttccttttgtgcattatttcccaaagatgaaattatgagcaagcacttc |
16403509 |
T |
|
| Q |
219 |
ctaattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagat |
318 |
Q |
| |
|
| ||||| || ||||| |||||||| || |||||||||||| |||| | || || || | | |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
16403508 |
atgattgagctttggattgctaatggcttcatttcatccaatcaaatgttggatgcagaaggtgttggtaatgaggtgtggaatgaattatattggagat |
16403409 |
T |
|
| Q |
319 |
catttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgct |
398 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |||||| || || ||||||||||||||||| ||||| |||||| |
|
|
| T |
16403408 |
catttttccaagatactgagacagatgaatttggtcaaattacatcatttaagatgcatgatcttgttcatgaacttgct |
16403329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 15453099 - 15453539
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||| || || |||||||||||||| || ||| | ||||||||| |
|
|
| T |
15453099 |
actaggaagtctcttgcgttttaaaagagaagaaaaagagtggctctatgtcaagaaaagcaaactttggagtttacaaggcgaaaattctgtcatgcct |
15453198 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||| | ||||| |||| |||| |||| ||| | | |
|
|
| T |
15453199 |
gccttgagattaagctacttcaatttgccaataaaattgagacaatgtttttccttctgtgcattatttcccaaaggtgaaactataagcaagaagatga |
15453298 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| || ||| |||| | ||||| || ||| |||| ||||||| || |||||||||||||||||||| |
|
|
| T |
15453299 |
taattgagctttggatttgtaatggttttatttcttctaatcaaatgttggaagcagaagatgttggtcatgaggtgtgtaatgaattatattggagatc |
15453398 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatctatatcagaagaggtt |
419 |
Q |
| |
|
| |||||||| ||| || ||||| ||||||||| || | | ||||||||||||||| |||| |||||||||||| | || | || |||||| |
|
|
| T |
15453399 |
acttttccaacataccgagacaggtgaatttggtcaatctgcagtattcaagatgcatgattttgttcatgatcttgctgagtcagttgcaagagaggtc |
15453498 |
T |
|
| Q |
420 |
tgttgtgttacagatgacaatggcatgcctagtatgtctga |
460 |
Q |
| |
|
||||| |||||||| |||||| | |||||| ||||||||| |
|
|
| T |
15453499 |
tgttgcattacagattacaatgacttgcctactatgtctga |
15453539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 22 - 404
Target Start/End: Complemental strand, 17928036 - 17927654
Alignment:
| Q |
22 |
taggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcctgc |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| || ||| |||||||| ||| || || ||||||| |||||||||||||| | ||||||| || |
|
|
| T |
17928036 |
taggaagtctgttgcgctttaaaagagaagaaaaagaatggatctatgtcaaggacagcaagttgtggagcttacaaggtgagaactctgtcatgcaggc |
17927937 |
T |
|
| Q |
122 |
cttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattccta |
221 |
Q |
| |
|
||||||||||||||||||| | ||||| | || ||||||||||| |||||||| | ||| | |||||||||||||||||||||| ||||| | ||| |
|
|
| T |
17927936 |
cttgagattaagttacttgtacttgccggttaagttgagacaatgctttgccttctctgctatatttccaaaagatgaattaataagtaagcagcttcta |
17927837 |
T |
|
| Q |
222 |
attgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatcat |
321 |
Q |
| |
|
||||| || ||| |||| ||||| || ||||| |||||||||| | | ||||| || |||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
17927836 |
attgaactttgggtggccaatggattcatttcgtccaatgaaagtttggaagcggaagatattggtgatgaggtgtggaatgaattatattggagttcat |
17927737 |
T |
|
| Q |
322 |
ttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgctcaatct |
404 |
Q |
| |
|
|||| |||||| | |||||| |||| || | ||| | ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
17927736 |
tttttcaagatgttcaaacagataaattaggtatggttacacatttcaaaatgcatgatcttgttcatgatcttgctcaatct |
17927654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 16397115 - 16396737
Alignment:
| Q |
20 |
actaggaagtctcttgcgttttaaaagagaggaaaaggagtggctctatgtcttggaaagtaatctgtggagtttacaaggtgagaatacagtcatgcct |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| ||||| |||||| |||||| || || |||| |||||||||||| | ||||||||| |
|
|
| T |
16397115 |
actaggaagtctcttgcggtttaaaagagaagaaaaggaatggctatatgtcaaggaaagcaagctatggaatttacaaggtgaagcttatgtcatgcct |
16397016 |
T |
|
| Q |
120 |
gccttgagattaagttacttgaatttgccaataaaattgagacaatgttttgccttttgtgcactttttccaaaagatgaattaataaaaaagcaattcc |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| || ||||| ||| |||| |||||| | ||||| ||||||||| | |||| ||||| | |
|
|
| T |
16397015 |
gccttgagattaagttacttgcatttgccagtaaaattaaggcaatgcttttccttctgtgcattatttcccaaagatgaaattataagcaagcagcttt |
16396916 |
T |
|
| Q |
220 |
taattgatctatggatggctaatggttttatttcatccaatgaaattctagaagctgaggatattggcaatgaggtatggaatgaattatattggagatc |
319 |
Q |
| |
|
|||||||||| |||| ||||| || || ||||| |||||| |||| | ||||| || || ||||| || ||||| |||||||||||||||||||| || |
|
|
| T |
16396915 |
taattgatctttggacagctaacggcttcatttcttccaatcaaatgttggaagcagatgacattggtaacgaggtgtggaatgaattatattggaggtc |
16396816 |
T |
|
| Q |
320 |
atttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtacatgatcttgct |
398 |
Q |
| |
|
||||||| || ||| | || | | |||||| |||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
16396815 |
atttttcgaaaatacagagaatgtgggatttggccaaattacaatattcaagatgcatgatcttgttcatgatcttgct |
16396737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 288 - 424
Target Start/End: Original strand, 15421650 - 15421786
Alignment:
| Q |
288 |
aatgaggtatggaatgaattatattggagatcatttttccaagatatcgtgacagatgaatttggaaaaattatatatttcaagatgcatgatcttgtac |
387 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||||| |||||| | | || ||||| |||||| |||||||| |||||||||||| |||||||| | |
|
|
| T |
15421650 |
aatgaggtgtggaatgaactgtattggagatcattttttcaagattttgagagagatgtatttggtgaaattataagtttcaagatgcacgatcttgttc |
15421749 |
T |
|
| Q |
388 |
atgatcttgctcaatctatatcagaagaggtttgttg |
424 |
Q |
| |
|
||||||| |||| || || ||||||||||| ||||| |
|
|
| T |
15421750 |
atgatctcgctcggtcaatttcagaagaggtgtgttg |
15421786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 30206691 - 30206653
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30206691 |
tttcaagatgcatgatcttgtccatgatcttgctcaatc |
30206653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 29853480 - 29853442
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29853480 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
29853442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 29872343 - 29872305
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29872343 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
29872305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 30242309 - 30242347
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30242309 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
30242347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 30338459 - 30338497
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30338459 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
30338497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 30435985 - 30435947
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30435985 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
30435947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 30483573 - 30483535
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
30483573 |
tttcaagatgcatgatcttgtccatgatctcgctcaatc |
30483535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 30521562 - 30521600
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
30521562 |
tttcaagttgcatgatcttgtccatgatcttgctcaatc |
30521600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 30561902 - 30561940
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
30561902 |
tttcaagttgcatgatcttgtccatgatcttgctcaatc |
30561940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 30060537 - 30060500
Alignment:
| Q |
366 |
ttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
30060537 |
ttcaagatgcatgaccttgtccatgatcttgctcaatc |
30060500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 403
Target Start/End: Complemental strand, 30749811 - 30749774
Alignment:
| Q |
366 |
ttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
30749811 |
ttcaagattcatgatcttgtccatgatcttgctcaatc |
30749774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 52352127 - 52352089
Alignment:
| Q |
365 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52352127 |
tttcaagatgcatgatcttgtacatgatcttgctcaatc |
52352089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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