View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4785_high_14 (Length: 242)

Name: NF4785_high_14
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4785_high_14
NF4785_high_14
[»] chr1 (2 HSPs)
chr1 (17-172)||(45709045-45709201)
chr1 (17-93)||(40821105-40821182)
[»] chr3 (2 HSPs)
chr3 (17-175)||(44940169-44940329)
chr3 (35-92)||(50663712-50663770)
[»] chr2 (2 HSPs)
chr2 (17-167)||(40262242-40262394)
chr2 (17-167)||(14820322-14820473)
[»] chr8 (1 HSPs)
chr8 (17-176)||(36122302-36122465)
[»] chr4 (3 HSPs)
chr4 (17-89)||(32238863-32238936)
chr4 (101-170)||(54152197-54152266)
chr4 (106-154)||(32238962-32239010)
[»] chr6 (1 HSPs)
chr6 (17-63)||(6208806-6208852)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 45709201 - 45709045
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttact-aaagcacttttcattcacccaaacaagnnnnnnntctggaaaccacgtt 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||       |||||||||||||||    
T  45709201 aataccagcttctgttgtactggccttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaagaaaaaaatctggaaaccacgtt 45709102  T
Q  116 tgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatacatagt 172  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  45709101 tgaaaaagtaaactcagttttggctgctgaaaaagtgatgccaaacacatacatagt 45709045  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 40821182 - 40821105
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttact-aaagcacttttcattcacccaaacaag 93  Q
    |||||||||||| |||||||  || |||||||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  40821182 aataccagcttcagttgtacacgcgttttgagatcaaaactgagtttcctggacgcacttttcattcacccaaacaag 40821105  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 44940169 - 44940329
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttact-aaagcacttttcattcacccaaacaag-nnnnnnntctggaaaccacgt 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||        |||| |||||||||    
T  44940169 aataccagcttctgttgtactgactttttgagatcaaaactgagtttcctgaaagcacttttcattcacccaaacaagaaaaaaaatctgaaaaccacgt 44940268  T
Q  115 ttgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatacatagtctt 175  Q
    |||||||||||||||||||||| || ||| ||||||||||  ||||||||||| |||||||    
T  44940269 ttgaaaaagtaaactcagttttagccgctgaaaaagtgatgtcaaacacatacttagtctt 44940329  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 50663770 - 50663712
Alignment:
Q  35 actggctttttgagatcaaaactgagtttacta-aagcacttttcattcacccaaacaa 92  Q
    |||||| |||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  50663770 actggcgttttgagatcaaaaccaagttttctataagcacttttcattcacccaaacaa 50663712  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 40262242 - 40262394
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttactaa-agcacttttcattcacccaaacaagnnnnnnn-tctggaaaccacgt 114  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||| || | |||||||||||||| ||||||||||        ||||||||||||||    
T  40262242 aataccagcttatgttgtactgacgttttgagatcaaaactgagtttcctgatagcacttttcattctcccaaacaagaaaaaaaatctggaaaccacgt 40262341  T
Q  115 ttgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatac 167  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  40262342 ttgaaaaagtaaactcaggtttggctactaaaaaagtgatgccaaacacatac 40262394  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 14820473 - 14820322
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagttt-actaaagcacttttcattcacccaaacaagnnnnnnntctggaaaccacgtt 115  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||  | |||||||||||||||||||||||||||       | |||||| ||||||    
T  14820473 aatatcagcttctgttgcactggcgttttgagatcaaaactgagtttcccgaaagcacttttcattcacccaaacaagaaaaaaatttggaaaacacgtt 14820374  T
Q  116 tgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatac 167  Q
    |||||||||||| |||| ||||||||||||||||||||| || |||||||||    
T  14820373 tgaaaaagtaaagtcaggtttggctgctaaaaaagtgatgccgaacacatac 14820322  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 36122302 - 36122465
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttact-aaagcacttttcattcacccaaac---aagnnnnnnntctggaaaccac 112  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||||||||   ||        ||||||||||||    
T  36122302 aataccagcttctgttgtattggcgttttgagatcaaaactgagtttcctgaaagcactttttattcacccaaacaaaaaaaaaaaaatctggaaaccac 36122401  T
Q  113 gtttgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatacatagtcttt 176  Q
    |||||||||||| ||||||  ||| ||| ||||||||||||| |||||||||||| | ||||||    
T  36122402 gtttgaaaaagtgaactcacgtttcgcttctaaaaaagtgatgccaaacacatactttgtcttt 36122465  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 32238863 - 32238936
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagtttact-aaagcacttttcattcacccaaa 89  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||||    
T  32238863 aataccagcttctgttgtactgtcgttttgagatcaaaactgagttttctgaaagcacttttcattctcccaaa 32238936  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 54152266 - 54152197
Alignment:
Q  101 tctggaaaccacgtttgaaaaagtaaactcagttttggctgctaaaaaagtgataccaaacacatacata 170  Q
    |||| ||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  54152266 tctgaaaaccacgtttaaaaaagtaaactcaattttggctgctgaaaaagtgatgccaaacacatacata 54152197  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 32238962 - 32239010
Alignment:
Q  106 aaaccacgtttgaaaaagtaaactcagttttggctgctaaaaaagtgat 154  Q
    ||||||||||||||||| |||||| || |||||||| ||||||||||||    
T  32238962 aaaccacgtttgaaaaaataaacttaggtttggctgttaaaaaagtgat 32239010  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 6208806 - 6208852
Alignment:
Q  17 aataccagcttctgttgtactggctttttgagatcaaaactgagttt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6208806 aataccagcttctgttgtactggctttttgagatcaaaactgagttt 6208852  T

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