View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_high_2 (Length: 528)
Name: NF4785_high_2
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 120 - 520
Target Start/End: Complemental strand, 49685102 - 49684699
Alignment:
| Q |
120 |
gtttgaatgtacacttgtgtatgtgagtttccgtagtatttatcttttcggattaaaaataaagtgccttagagaaaattagaagtatatctagaaacat |
219 |
Q |
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| T |
49685102 |
gtttgaatgtacacttgtgtatgtgagtttccgtagtatttatcttttcggattaaaaataaagtgccttggagaaaattagaagtatatctagaaacat |
49685003 |
T |
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| Q |
220 |
agatcactaagctgactgaacaatatatttaaccgaaaatgaaccgccaaataaccaacaagtactagcaattcaacagcttgaacttgttcagtaatgc |
319 |
Q |
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| T |
49685002 |
agatcactaagctgactgaacaatatatttaaccgaaaaagaaccgccaaataatcaacaagtactagcaattcaacggcttgaacttgttcagtaatgc |
49684903 |
T |
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| Q |
320 |
gttgtttttcttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagt |
419 |
Q |
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| T |
49684902 |
attgtttttcttttcttattaagaaagtgcaaaactatgtatatcgtttttcatcttttaaaactaattccagtagtttcagtttctgatcaaattaagt |
49684803 |
T |
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| Q |
420 |
taaagccaaaaccctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctc---ttctcctctagggacgactttcctt |
516 |
Q |
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| T |
49684802 |
taaagccaaaaccctaaagctattatcatcaccaacagcaccactgctgaacatagagctaccctttacctcttcttctcctctagggacgactttcctt |
49684703 |
T |
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| Q |
517 |
tgct |
520 |
Q |
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| T |
49684702 |
tgct |
49684699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 49689578 - 49689482
Alignment:
| Q |
191 |
gagaaaattagaagtatatctagaaacatagatcactaagctgactgaacaa-tatatttaaccgaaaatgaaccgccaaataaccaacaagtactagca |
289 |
Q |
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| T |
49689578 |
gagaaaataagaagtgtat--agaaacatagatctcaaagctgacagaacaaatggatttaactgaaaa--aaccgccaaataatcaacaggtactagca |
49689483 |
T |
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