View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4785_high_6 (Length: 427)

Name: NF4785_high_6
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4785_high_6
NF4785_high_6
[»] chr8 (15 HSPs)
chr8 (110-417)||(15447419-15447726)
chr8 (174-417)||(15314578-15314821)
chr8 (174-417)||(15494947-15495190)
chr8 (216-417)||(15303704-15303905)
chr8 (216-417)||(15484073-15484274)
chr8 (174-417)||(15285189-15285432)
chr8 (174-417)||(15465558-15465801)
chr8 (236-415)||(18063981-18064160)
chr8 (1-59)||(15447788-15447846)
chr8 (112-171)||(15285529-15285590)
chr8 (112-171)||(15465898-15465959)
chr8 (112-171)||(15298718-15298778)
chr8 (112-171)||(15314909-15314969)
chr8 (112-171)||(15479087-15479147)
chr8 (112-171)||(15495278-15495338)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 110 - 417
Target Start/End: Complemental strand, 15447726 - 15447419
Alignment:
Q  110 ttagggtctccccaaaatgaacccagggttgttaacccaattgatactccatatgtgccaccacaatgcaccactttctctattactatcatttgtattc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447726 ttagggtctccccaaaatgaacccagggttgttaacccaattgatactccatatgtgccaccacaatgcaccactttctctattactatcatttgtattc 15447627  T
Q  210 atatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447626 atatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggca 15447527  T
Q  310 tgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15447526 tgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagtctcccttgtttcac 15447427  T
Q  410 tgatgatg 417  Q
    ||||||||    
T  15447426 tgatgatg 15447419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 174 - 417
Target Start/End: Complemental strand, 15314821 - 15314578
Alignment:
Q  174 aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc 273  Q
    ||||||||| | ||||||||| | |||||| || | ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15314821 aatgcaccattctctctattattttcatttataataatattaaatatagtaatatgtgagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc 15314722  T
Q  274 tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa 373  Q
    | | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  15314721 tttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggagaggagttcattgtaacatgaa 15314622  T
Q  374 tggtagagtcacaaatatcagcctcccttgtttcactgatgatg 417  Q
    ||| |||||||||||||||||||||||||||||||| |||||||    
T  15314621 tggcagagtcacaaatatcagcctcccttgtttcaccgatgatg 15314578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 174 - 417
Target Start/End: Complemental strand, 15495190 - 15494947
Alignment:
Q  174 aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc 273  Q
    ||||||||| | ||||||||| | |||||| || | ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15495190 aatgcaccattctctctattattttcatttataataatattaaatatagtaatatgtgagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc 15495091  T
Q  274 tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa 373  Q
    | | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  15495090 tttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggagaggagttcattgtaacatgaa 15494991  T
Q  374 tggtagagtcacaaatatcagcctcccttgtttcactgatgatg 417  Q
    ||| |||||||||||||||||||||||||||||||| |||||||    
T  15494990 tggcagagtcacaaatatcagcctcccttgtttcaccgatgatg 15494947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 216 - 417
Target Start/End: Complemental strand, 15303905 - 15303704
Alignment:
Q  216 aatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgc 315  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||     
T  15303905 aatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttgg 15303806  T
Q  316 gaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga 415  Q
     ||||||||| |||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||    
T  15303805 caacatggtccaacaaagaggattgttgtaaatggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatga 15303706  T
Q  416 tg 417  Q
    ||    
T  15303705 tg 15303704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 216 - 417
Target Start/End: Complemental strand, 15484274 - 15484073
Alignment:
Q  216 aatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgc 315  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||     
T  15484274 aatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttgg 15484175  T
Q  316 gaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga 415  Q
     ||||||||| |||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||    
T  15484174 caacatggtccaacaaagaggattgttgtaaatggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatga 15484075  T
Q  416 tg 417  Q
    ||    
T  15484074 tg 15484073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 174 - 417
Target Start/End: Complemental strand, 15285432 - 15285189
Alignment:
Q  174 aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc 273  Q
    |||||||| || ||||||||| | ||| || || ||||||  |||||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  15285432 aatgcacccctctctctattattttcagttttaatcatattaaatataataatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 15285333  T
Q  274 tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa 373  Q
    ||  ||||| ||||||||||| |||| ||||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||    
T  15285332 tcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggagaggagttcattgtaatatcaa 15285233  T
Q  374 tggtagagtcacaaatatcagcctcccttgtttcactgatgatg 417  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||    
T  15285232 tggcagagtcacaaatatcagcctcccttgttttactgatgatg 15285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 174 - 417
Target Start/End: Complemental strand, 15465801 - 15465558
Alignment:
Q  174 aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc 273  Q
    |||||||| || ||||||||| | ||| || || ||||||  |||||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||||    
T  15465801 aatgcacccctctctctattattttcagttttaatcatattaaatataataatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatactcc 15465702  T
Q  274 tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa 373  Q
    ||  ||||| ||||||||||| |||| ||||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||    
T  15465701 tcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggagaggagttcattgtaatatcaa 15465602  T
Q  374 tggtagagtcacaaatatcagcctcccttgtttcactgatgatg 417  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||    
T  15465601 tggcagagtcacaaatatcagcctcccttgttttactgatgatg 15465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 236 - 415
Target Start/End: Complemental strand, 18064160 - 18063981
Alignment:
Q  236 aaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaa 335  Q
    ||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||  ||  |||||| |||||||  ||||||||| |||||| ||    
T  18064160 aaatgcttcttgcaaccaaaaggacaaacaaatactcctttgttttaaacatggactcaccgactcattagacatgttgtcaacatggtccaacaaagaa 18064061  T
Q  336 gattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga 415  Q
    ||||||||  |||||||||||||||| |||||||| ||||||||||| |||||| |||  ||||||||||||| ||||||    
T  18064060 gattgttgtgaatggagaggagttcaatgtaacatcaatggtagagtaacaaatctcaatctcccttgtttcattgatga 18063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15447846 - 15447788
Alignment:
Q  1 acactatcttttaccttcttatcatcagcatatttttccttgtttgagaaaagtgaaag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447846 acactatcttttaccttcttatcatcagcatatttttccttgtttgagaaaagtgaaag 15447788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15285590 - 15285529
Alignment:
Q  112 agggtctccccaaaatgaacccagggttgtta--acccaattgatactccatatgtgccacc 171  Q
    ||||| |||| |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  15285590 agggtatcccaaaaatgaacccaaggttgttataacccaattgatactccatatgtgccacc 15285529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15465959 - 15465898
Alignment:
Q  112 agggtctccccaaaatgaacccagggttgtta--acccaattgatactccatatgtgccacc 171  Q
    ||||| |||| |||||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  15465959 agggtatcccaaaaatgaacccaaggttgttataacccaattgatactccatatgtgccacc 15465898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15298778 - 15298718
Alignment:
Q  112 agggtctccccaaaat-gaacccagggttgttaacccaattgatactccatatgtgccacc 171  Q
    |||||||||||||||  ||| ||| ||| |||||||||| ||| |||||||||||||||||    
T  15298778 agggtctccccaaaaaagaagccaaggtcgttaacccaactgacactccatatgtgccacc 15298718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15314969 - 15314909
Alignment:
Q  112 agggtctccccaaaat-gaacccagggttgttaacccaattgatactccatatgtgccacc 171  Q
    |||||||||||||||  ||| ||| ||| |||||||||| ||| |||||||||||||||||    
T  15314969 agggtctccccaaaaaagaagccaaggtcgttaacccaactgacactccatatgtgccacc 15314909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15479147 - 15479087
Alignment:
Q  112 agggtctccccaaaat-gaacccagggttgttaacccaattgatactccatatgtgccacc 171  Q
    |||||||||||||||  ||| ||| ||| |||||||||| ||| |||||||||||||||||    
T  15479147 agggtctccccaaaaaagaagccaaggtcgttaacccaactgacactccatatgtgccacc 15479087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15495338 - 15495278
Alignment:
Q  112 agggtctccccaaaat-gaacccagggttgttaacccaattgatactccatatgtgccacc 171  Q
    |||||||||||||||  ||| ||| ||| |||||||||| ||| |||||||||||||||||    
T  15495338 agggtctccccaaaaaagaagccaaggtcgttaacccaactgacactccatatgtgccacc 15495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University