View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_low_14 (Length: 263)
Name: NF4785_low_14
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 40489216 - 40489460
Alignment:
| Q |
10 |
caatggtttttattttctcatattgagaggagttttccacgataaatttcctgtgttctcatttatgacttttactcannnnnnnnnnnnnnnnnnnngc |
109 |
Q |
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| T |
40489216 |
caatggtttttattttctcatattgagaggagttttccacgataaattccctgtgttctcatttatggcttttactcattgttgttgttgttggttgtgc |
40489315 |
T |
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| Q |
110 |
aggattaatttgattgttcaggtttcacaaaaagagataacctaagctttcgcttattccgtattgcacactctgatcccaagacaaatttccttatttt |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40489316 |
gggattaatttgattgttcaagtttcacaaaaagagataatccaagcttccgcttattccgtattgcacactctgatcccaagacaaatttccttatttt |
40489415 |
T |
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| Q |
210 |
taactatattatttatgcacatgatttgattgatatatgatgatg |
254 |
Q |
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| T |
40489416 |
taactatgttatttatgcacatgatttgattgatatatgatgatg |
40489460 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 2281547 - 2281622
Alignment:
| Q |
116 |
aatttgattgttcaggtttcacaaaaagagataacctaagctttcgcttattccgtattgcacactctgatcccaa |
191 |
Q |
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| T |
2281547 |
aattggattgttcaggttccacaaaaagagataatttaagcttccgcagattccgttttgcgcacactgatcccaa |
2281622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 35905856 - 35905931
Alignment:
| Q |
116 |
aatttgattgttcaggtttcacaaaaagagataacctaagctttcgcttattccgtattgcacactctgatcccaa |
191 |
Q |
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| T |
35905856 |
aattggattgttcaggttccacaaaaagagataatttaagcttccgcatattccgctctgcgcactctgattccaa |
35905931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 18939868 - 18939944
Alignment:
| Q |
116 |
aatttgattgttcaggtttcacaa-aaagagataacctaagctttcgcttattccgtattgcacactctgatcccaa |
191 |
Q |
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||||||||||||||| || ||||| ||| |||||| ||||||| || |||| |||||||||||||||||||||| |
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| T |
18939868 |
aatttgattgttcagattccacaagaaaaagataatttaagcttctgcatattttgtattgcacactctgatcccaa |
18939944 |
T |
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