View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4785_low_18 (Length: 233)
Name: NF4785_low_18
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_18 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 29690288 - 29690482
Alignment:
| Q |
32 |
gcacaaccattccatatatcccacaaacccaaagcaagaactagagccatacatgatgagccctctgatcagaatcgcgttggcaataaacttattctct |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
29690288 |
gcacaaccattccatatatcccacaaacccaaagcaagaactagagccatacatgatgagccctctgatcagaatcgcgttagcaataaacttattttct |
29690387 |
T |
|
| Q |
132 |
agttcctataccttaagaaagctcatcaaatactcaactcatcttcatactcttctcaagtggatattcaacttattttccagctacctatgcta |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29690388 |
agttcctataccttaagaaagctcatcaaatactcaactcatcttcatactcttctcaagtggatattcaacttattttccagctacctatgcta |
29690482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 27412 - 27527
Alignment:
| Q |
52 |
ccacaaacccaaagcaagaactagagccatacatgatgagccctctgatcagaatcgcgttggcaataaacttattctctagttcctataccttaagaaa |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| || |||||||||| || ||| | ||| ||||||||||||| |
|
|
| T |
27412 |
ccacaaacccaaagcaagaactaaagccaa----gatgagccctctgattagaatcgcattagcaataaactccttttcttgctcccataccttaagaaa |
27507 |
T |
|
| Q |
152 |
gctcatcaaatactcaactc |
171 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
27508 |
cctcatgaaatactcaactc |
27527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University