View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_low_20 (Length: 230)
Name: NF4785_low_20
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 48686704 - 48686507
Alignment:
| Q |
1 |
gaggatttggaattaggagaaccgacgatgtaggcattgagagcaccaagcttttcaacgtgaccagatcctgcattcggattcagtgttggtggatttg |
100 |
Q |
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| T |
48686704 |
gaggatttggaattaggagaaccggcgatgtaggcattgagagcaccaagcttttcaacgtgaccagatcctgcattcggattcagtattggtggatttg |
48686605 |
T |
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| Q |
101 |
agcaacattcaggtcctgacattctttc------------tttcgcactcacagtcacagacacttgtttctattattccaagggtaggttctagcta |
186 |
Q |
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| T |
48686604 |
agcaacattcaggtcctgacattctttctttctttctttctttcgcactcacagtcacatacacttgtttctattattccaagggtaggttctagcta |
48686507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 48686487 - 48686441
Alignment:
| Q |
184 |
ctataatatcgaagtaacgtcgtcaatttttagattcatacttctaa |
230 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48686487 |
ctataatatcgaagtaacgtcgtcaattttgagattcatacttctaa |
48686441 |
T |
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