View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_low_23 (Length: 212)
Name: NF4785_low_23
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 35835016 - 35835195
Alignment:
| Q |
16 |
cacattcttcaggaacacctagtgtgcaagaattatttacaaaccctgacaagtccacaaacacgtcagcttcctcaaagtgactactgctatctagatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35835016 |
cacattcttcaggaacacctagtgtgcaagaattatttacaaaccctgacaagtccacaaacaagtcagcttcctcaaagtgactactgctatctagatg |
35835115 |
T |
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| Q |
116 |
caaaagttcaacagaagagaggtgagtttctgattcgatgtcaatgaattcattatcaacactttcaaagtcactcagaa |
195 |
Q |
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| T |
35835116 |
caaaagttcagcagaagagaggtgagtttctgattcgatgtcaatgaattcattatcaacactttcaaagtcactcagaa |
35835195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 35911367 - 35911187
Alignment:
| Q |
15 |
tcacattcttcaggaacacctagtgtgcaagaattatttacaaaccctgacaagtccacaaacacgtcagcttcctcaaagtgactactgctatctagat |
114 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||| |
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| T |
35911367 |
tcacattcttcaggaacacctagtgagcaagaattttttacaaaccctgacaagtccccaaacacgtcaacttccttaaagtgactacttctatctagat |
35911268 |
T |
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| Q |
115 |
gcaaaagttcaacagaagagaggtgagtttctgattcgatgtcaatgaattcattatcaacactttcaaagtcactcagaa |
195 |
Q |
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| T |
35911267 |
gcagaagttcaaaagaagagaggtgggtttttgattcaaagtccatgtattcattatcaacaatgtcaaagtcactaagaa |
35911187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 35842931 - 35843110
Alignment:
| Q |
16 |
cacattcttcaggaacacctagtgtgcaagaattatttacaaaccctgacaagtccacaaacacgtcagcttcctcaaagtgactactgctatctagatg |
115 |
Q |
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||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35842931 |
cacattcttcaagaacacctagcgtgcaagaattttttacaaaccctgacaagtccccaaacgtgtcagcttcctcaaagtgactactgctatctagatg |
35843030 |
T |
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| Q |
116 |
caaaagttcaacagaagagaggtgagtttctgattcgatgtcaatgaattcattatcaacactttcaaagtcactcagaa |
195 |
Q |
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|| || |||| |||||||| || ||||||||||| | ||| ||| |||||||||||||| | ||||||||||| |||| |
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| T |
35843031 |
cagaaattcagaagaagagaaatgggtttctgattcaaagtccatgtattcattatcaacaatgtcaaagtcactaagaa |
35843110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 35910907 - 35911081
Alignment:
| Q |
16 |
cacattcttcaggaacacctagtgtgcaagaattatttacaaaccctgacaagtccacaaacacgtcagcttcctcaaagtgactactgctatctagatg |
115 |
Q |
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||||||||||| ||||| |||||||||||| | | |||||||||||| |||||||| |||| |||||| |||||||||||||||||||| | || ||| |
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| T |
35910907 |
cacattcttcatgaacaactagtgtgcaaggagtttttacaaaccctaacaagtccccaaatgcgtcagattcctcaaagtgactactgccacttatatg |
35911006 |
T |
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| Q |
116 |
caaaagttcaacagaagagaggtgagtttctgattcgatgtcaatgaattcattatcaacactttcaaagtcact |
190 |
Q |
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| T |
35911007 |
ccgaagttcagaagaagagtgatgggtttctgatccaaagtccatgtattcattatgaacaatgtcaaagtcact |
35911081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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