View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4785_low_3 (Length: 505)
Name: NF4785_low_3
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 5476368 - 5475907
Alignment:
| Q |
19 |
gattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttgcaaagat |
118 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5476368 |
gattgatctctactagacagaacccaagacttaaagttcttaaaactattttcatcccacgacggaatatatgtgagagtagtgagacgtttgcaaagat |
5476269 |
T |
|
| Q |
119 |
ccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcactaatcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5476268 |
ccttccatcgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcactaatcct |
5476169 |
T |
|
| Q |
219 |
atttcccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcataagcactactaatacaagtattata |
318 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||| |
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| T |
5476168 |
atttcctgcctctgtttcatcagtcccctacaaagtttccgattggataaataatcaattagacatatatagcataagcactactaatataagtattata |
5476069 |
T |
|
| Q |
319 |
taacaaaggataaaacaaagtcatagtattttcacagtttttatggaaatagttataaaaaactaagttataaaaaactaggtttttccccttcaacttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5476068 |
taacaaaggataaaacaaagtcatagtattttcagagtttttatggaaatagttataaaaaactaa---------------gtttttccccttcaacttc |
5475984 |
T |
|
| Q |
419 |
aaataagttaatccaaacagacaccatatcaattatgcaaatattaagattaaa-attcattttagaccctaaatgc |
494 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5475983 |
aaataagttaatccaaacagacatcatatcaattatgcaaatattaagattaaacattcattttagaccctaaatgc |
5475907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 8403829 - 8403490
Alignment:
| Q |
19 |
gattgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttgcaaagat |
118 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
8403829 |
gattgatctctactagacagaacccaagactgaaagttcttaaaactactttcatcccacgacggaatatatgcgagagtagtgagacgtttgcaaagat |
8403730 |
T |
|
| Q |
119 |
ccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcactaatcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8403729 |
ccttccatcgtttagacaagatgcaagtccgaacagcgtctcgtgcttcaagaaaactcattatgtggaggagtatgcagtcaggtaactcaccaatcct |
8403630 |
T |
|
| Q |
219 |
atttc------ccgcctctgtttcatcagtcccctacaaagtttccgattggataaataattaatttgacatttatagcataagcactactaatacaagt |
312 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
8403629 |
atttcttctattttcctctgtttcttcagttccctacaaagtttctcattggataaataattaattaaacatttatagcataagcactacgaatataagt |
8403530 |
T |
|
| Q |
313 |
attatataacaaaggataaaacaaagtcatagtattttca |
352 |
Q |
| |
|
||| ||||||||||||||||| ||| | |||||||||||| |
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|
| T |
8403529 |
attgtataacaaaggataaaataaatttatagtattttca |
8403490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 8356419 - 8356617
Alignment:
| Q |
22 |
tgatctctacaagtcagaacccaagacttaaagttcttaaaactattttcatcccatgacggaatatatgtgagagtagtgagacgtttgcaaagatcct |
121 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||| || | | | |||||||||||||||||| ||| ||| |||||||||||||||| |
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|
| T |
8356419 |
tgatctctacaagacagaacccaagaataaaagttcttaaaact---ttgagctgaagacggaatatatgtgagaatagggaggcgtttgcaaagatcct |
8356515 |
T |
|
| Q |
122 |
tccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtggaggagtatgcagtcaggtaactcactaatcctatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| ||||||| | || |||||| || ||||||||||||||||| |
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|
| T |
8356516 |
tccatcgtttagacaagatgcaagtccgaacaacatcttctgcttcaagaaaactcaatatgtggaccaataagcagtctggcaactcactaatcctatt |
8356615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 9138961 - 9139103
Alignment:
| Q |
81 |
cggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatc |
180 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
9138961 |
cggagtatatgtgagagtagtgaggcatttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatcttgtgcttcaagaaaactcaat |
9139060 |
T |
|
| Q |
181 |
atgtggaggagtatgcagtcaggtaactcactaatcctatttc |
223 |
Q |
| |
|
|||||||| | |||||||||||| ||||||| ||||||||||| |
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|
| T |
9139061 |
atgtggagcaatatgcagtcaggcaactcacaaatcctatttc |
9139103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 8359522 - 8359663
Alignment:
| Q |
82 |
ggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatca |
181 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||||| | |
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| T |
8359522 |
ggaatatatgtgagagtagggagacgtttgcaaagatccttccatcgtttagacaagatgcaagttcgaacagcgtctcgagctttcaaaaaactcatta |
8359621 |
T |
|
| Q |
182 |
tgtggaggagtatgcagtcaggtaactcactaatcctatttc |
223 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| ||| |||||| |
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|
| T |
8359622 |
tgtggagcagtatgcagtcaggtaacttactgatcatatttc |
8359663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 8410820 - 8410656
Alignment:
| Q |
79 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
178 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||| |
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|
| T |
8410820 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatgcaagtccgaacagcatctcgtgcttcaagaaaactca |
8410721 |
T |
|
| Q |
179 |
tcatgtggaggagtatgcagtcaggtaactcactaatccta-tttcccgcctctgtttcatcagt |
242 |
Q |
| |
|
|| | ||| | || ||||||||| ||||||||||||||| |||||||| ||||| || ||||| |
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|
| T |
8410720 |
atatctagagcaataagcagtcaggcaactcactaatcctattttcccgcatctgtgtcttcagt |
8410656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 43144836 - 43144976
Alignment:
| Q |
83 |
gaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcat |
182 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| || |||||||||||||||| || |
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|
| T |
43144836 |
gaatatatttgagagtagtgacacgtttgcaaagatccttccatcgcttagacaagatgcaagttcgaacaacgtctcgtgcttcaagaaaactcattat |
43144935 |
T |
|
| Q |
183 |
gtggaggagtatgcagtcaggtaactcactaatcctatttc |
223 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| ||||| |
|
|
| T |
43144936 |
atggagcagtatgcagtcgggcaactcactaatccaatttc |
43144976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 8416473 - 8416330
Alignment:
| Q |
79 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
178 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||| || ||||||||||||||| |
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|
| T |
8416473 |
gacggagtatatgtgagagtagtgaggcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaactca |
8416374 |
T |
|
| Q |
179 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctattt |
222 |
Q |
| |
|
|| ||||| | || ||||||||| |||||||||||||||||| |
|
|
| T |
8416373 |
atatatggagcaataagcagtcaggcaactcactaatcctattt |
8416330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 8036362 - 8036498
Alignment:
| Q |
86 |
tatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactcatcatgtg |
185 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||| |||||||||| |||| ||||| |
|
|
| T |
8036362 |
tatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtctgaacagcatcttgtgcttcaagaaacctcagtatgtg |
8036461 |
T |
|
| Q |
186 |
gaggagtatgcagtcaggtaactcactaatcctattt |
222 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
8036462 |
gagcaatatgcagtcaggcaactcactaatcctattt |
8036498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 8041772 - 8041913
Alignment:
| Q |
79 |
gacggaatatatgtgagagtagtgagacgtttgcaaagatccttccatcgtttagacaagatgcaagtccgaacagcgtcttgtacttcaagaaaactca |
178 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||| || |||||||||||| || |
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|
| T |
8041772 |
gacggagtatatgtgagagtagtgacgcgtttgcaaagatccttccaccgtttagacaagatacaagtccgaacagcatctcgtgcttcaagaaaaccca |
8041871 |
T |
|
| Q |
179 |
tcatgtggaggagtatgcagtcaggtaactcactaatcctat |
220 |
Q |
| |
|
||||||| | |||||||||||| || ||||||||||||| |
|
|
| T |
8041872 |
atgtgtggagcaatatgcagtcaggcaaatcactaatcctat |
8041913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 8403441 - 8403371
Alignment:
| Q |
382 |
taagttataaaaaactaggtttttccccttcaacttcaaataagttaatccaaacagacaccatatcaatt |
452 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8403441 |
taagttataaaaaactaagtttttccccttcaacttcaaataagttaatccaaacagaaaccatatcaatt |
8403371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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