View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_low_5 (Length: 427)
Name: NF4785_low_5
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 2249711 - 2250125
Alignment:
| Q |
18 |
agactttatatagtgtcccaaccgcatttagaatctccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcat |
117 |
Q |
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| T |
2249711 |
agactttatatagtgtcccaaccgcatttagaatctccacggttgggattttctagcattcatggagacaggacattggtggtcgtttgatcaagatcat |
2249810 |
T |
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| Q |
118 |
acgattcaaattcaaactttatattttaaattgtaaaattaaagtcttgcatttgtttggaccgtttaatctagatcgaacta--------tcactgatg |
209 |
Q |
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| T |
2249811 |
acgattcaaattcaaactttatattttaaattgtaaaattaaagtcttgcttttgtttggaccgtttaatctagatcgaactatcacactatcactgatg |
2249910 |
T |
|
| Q |
210 |
tcttgaatgtgagatcccctggtggcagggaatccaaattcaatcctaactaagttttaactatctttaataatctcctactaattctaacatcttttta |
309 |
Q |
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| T |
2249911 |
tcttgaatgtgagatccccgggtggcagggaatccaaattcaatcctaacttagttttaactatctttaataatctcctactaattctaacatctttttt |
2250010 |
T |
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| Q |
310 |
tattcttcatagttttcttattgaaggga--atatgaaatgttgttttggttttgatgtgcagggaaatccaattgattgggtgagtactcataggtatc |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2250011 |
tattcttcatagttttcttattgaagggaatatatgaaatgttgttttgattttgatgtgcagggaaatccaattgattgggtgagtactcataggtatc |
2250110 |
T |
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| Q |
408 |
accaccagttctgtg |
422 |
Q |
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| T |
2250111 |
accaccagttctgtg |
2250125 |
T |
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