View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4785_low_8 (Length: 392)
Name: NF4785_low_8
Description: NF4785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4785_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 139 - 375
Target Start/End: Original strand, 30732487 - 30732724
Alignment:
| Q |
139 |
agaatcaattttgtttattagtcttcattttattttatctcatttcactaataaagttataaatatttataagtagaataagacaatgggcatacaatga |
238 |
Q |
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| T |
30732487 |
agaatcaattttgtttattagtcttcattttattttatctcatttcactaataaagttataaatatttataagtagaataagacaatgggcatacaatga |
30732586 |
T |
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| Q |
239 |
atgaaataaattgttttgaatcttttaaaatgaaatttggt-aaaatttcttcacttgtttgataactcaaacaggaagcaaaccggtaaacaattaggt |
337 |
Q |
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| T |
30732587 |
atgaaataaattgttttgaatcttttaaaatgaaatttggtaaaaatttcttcacttgtttgataactcaaacaggaagcaaaccggtaaacaattaggt |
30732686 |
T |
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| Q |
338 |
cagattcatagtaaaaagaaacacagaaatgtaaaaat |
375 |
Q |
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| T |
30732687 |
cagattcatagtaaaaagaaacacagaaatgtaaaaat |
30732724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 30732236 - 30732350
Alignment:
| Q |
7 |
ggagcagagaaaggctgagtggtcaattttactcacaaacccctcaatccctgagcatttaagctnnnnnnnntctacatctttcacgacaatatgataa |
106 |
Q |
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| T |
30732236 |
ggagcagagaaaggctgagtggtcaattttactcacaaacccctcaatccctgagcatttaagctaaaaaaaatctacatctttcacgacaatatgataa |
30732335 |
T |
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| Q |
107 |
agaaaagtacaataa |
121 |
Q |
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| T |
30732336 |
agaaaagtacaataa |
30732350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 30732395 - 30732427
Alignment:
| Q |
137 |
aaagaatcaattttgtttattagtcttcatttt |
169 |
Q |
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| T |
30732395 |
aaagaatcaattttgtttattagtcttcatttt |
30732427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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