View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4786-Insertion-2 (Length: 737)

Name: NF4786-Insertion-2
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4786-Insertion-2
NF4786-Insertion-2
[»] chr2 (3 HSPs)
chr2 (552-737)||(20693444-20693628)
chr2 (445-522)||(20693368-20693445)
chr2 (155-203)||(20693075-20693123)
[»] chr1 (4 HSPs)
chr1 (586-707)||(235947-236068)
chr1 (584-707)||(8813561-8813684)
chr1 (606-707)||(229914-230015)
chr1 (586-704)||(250568-250686)
[»] chr3 (15 HSPs)
chr3 (582-708)||(9341567-9341693)
chr3 (584-723)||(9654586-9654728)
chr3 (607-704)||(9403059-9403156)
chr3 (630-709)||(9370490-9370569)
chr3 (586-704)||(9344679-9344797)
chr3 (607-704)||(9421298-9421395)
chr3 (634-709)||(9348836-9348911)
chr3 (584-723)||(9645593-9645735)
chr3 (584-708)||(9613068-9613192)
chr3 (646-709)||(9433703-9433766)
chr3 (586-709)||(9494003-9494126)
chr3 (644-719)||(9616710-9616788)
chr3 (634-723)||(9625753-9625845)
chr3 (640-681)||(9449155-9449196)
chr3 (640-708)||(9353757-9353825)
[»] chr5 (1 HSPs)
chr5 (607-704)||(18571897-18571994)
[»] chr6 (10 HSPs)
chr6 (601-682)||(28177059-28177140)
chr6 (640-704)||(7047639-7047703)
chr6 (586-682)||(28219811-28219907)
chr6 (601-704)||(28133077-28133180)
chr6 (601-704)||(28177179-28177282)
chr6 (584-710)||(9158652-9158778)
chr6 (644-710)||(9171650-9171716)
chr6 (601-680)||(28219970-28220049)
chr6 (639-709)||(7030588-7030658)
chr6 (644-701)||(7026589-7026646)
[»] scaffold0038 (2 HSPs)
scaffold0038 (586-682)||(20309-20405)
scaffold0038 (601-680)||(20468-20547)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 552 - 737
Target Start/End: Original strand, 20693444 - 20693628
Alignment:
Q  552 ccatcatcgattgttcatggccatggcagtaaactggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctc 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693444 ccatcatcgattgttcatggccatggcagtaaactggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctc 20693543  T
Q  652 attcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatccaaatttaaccatcggagtttccactat 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  20693544 attcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatccaaattcaaccatc-gagtttccactat 20693628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 445 - 522
Target Start/End: Original strand, 20693368 - 20693445
Alignment:
Q  445 attcctagaacaaaaaatgctgtctgatatataaataggactaattggaacgtatcttcctatacctagttttgttcc 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693368 attcctagaacaaaaaatgctgtctgatatataaataggactaattggaacgtatcttcctatacctagttttgttcc 20693445  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 20693075 - 20693123
Alignment:
Q  155 gaatatttgatataaaatagaaacaaatctttttaattattttgagtag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693075 gaatatttgatataaaatagaaacaaatctttttaattattttgagtag 20693123  T

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Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 586 - 707
Target Start/End: Complemental strand, 236068 - 235947
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgtt 685  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||| || |||| |||| |||||||||||||||| |||||| ||||| ||||||||||||    
T  236068 tggtctaaactgccaaaggatcttctgaatcttatatcaaaacaaattgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgtt 235969  T
Q  686 cttcctccatcccaaatcacca 707  Q
    |||| |||||||| ||||||||    
T  235968 cttcttccatcccgaatcacca 235947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 584 - 707
Target Start/End: Original strand, 8813561 - 8813684
Alignment:
Q  584 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 683  Q
    ||||||||||||||||  |||| |||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||| ||||| |||||||||     
T  8813561 actggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggca 8813660  T
Q  684 ttcttcctccatcccaaatcacca 707  Q
    |||||| |||||||||||||||||    
T  8813661 ttcttcttccatcccaaatcacca 8813684  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 606 - 707
Target Start/End: Complemental strand, 230015 - 229914
Alignment:
Q  606 tcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcac 705  Q
    |||| |||||||||||||   ||  ||||||| |||| ||||| |||||||||| |||||| | |||||||||||||||||||| |||||||||||||||    
T  230015 tcttttgaatctgatatcgtgacgaatcgacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcac 229916  T
Q  706 ca 707  Q
    ||    
T  229915 ca 229914  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 704
Target Start/End: Original strand, 250568 - 250686
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgtt 685  Q
    ||||||||||| || || || ||| |||||||||||||  |||   |||||| | || ||||||||| | |||| |||||| | ||||||||||||||||    
T  250568 tggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcgacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgtt 250667  T
Q  686 cttcctccatcccaaatca 704  Q
    || | ||||||||||||||    
T  250668 ctgcttccatcccaaatca 250686  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 582 - 708
Target Start/End: Complemental strand, 9341693 - 9341567
Alignment:
Q  582 aaactggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattgg 681  Q
    |||||||||| |||| || |||||||| || | |||||||||  |||  || |||| |||| ||||||||||||| ||||||||  ||||||||||||||    
T  9341693 aaactggtctcaactcccaaaggatctactcactctgatatcgcaacgaattgacaccgaaatcgatctcattcgatttcgatccatttgttccaattgg 9341594  T
Q  682 cgttcttcctccatcccaaatcaccat 708  Q
    |||||||||||||||||||||||||||    
T  9341593 cgttcttcctccatcccaaatcaccat 9341567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 584 - 723
Target Start/End: Original strand, 9654586 - 9654728
Alignment:
Q  584 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 683  Q
    |||||||||| || |||||||| ||||||||| |||| ||  |||  ||||||| |||| ||||| | |||||||||||||| |||||||||||||||||    
T  9654586 actggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcgatatgattcgctttcgatcggtttgttccaattggcg 9654685  T
Q  684 t---tcttcctccatcccaaatcaccatccaaatttaaccatc 723  Q
    |   ||||||||| |||||||||||||||  ||||||||||||    
T  9654686 tcgctcttcctccgtcccaaatcaccatctcaatttaaccatc 9654728  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 607 - 704
Target Start/End: Complemental strand, 9403156 - 9403059
Alignment:
Q  607 cttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatca 704  Q
    |||||||||||||||||  |||  |||  || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9403156 cttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatca 9403059  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 630 - 709
Target Start/End: Complemental strand, 9370569 - 9370490
Alignment:
Q  630 catcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatc 709  Q
    |||||||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  9370569 catcgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatc 9370490  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 586 - 704
Target Start/End: Complemental strand, 9344797 - 9344679
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgtt 685  Q
    ||||||||||| || ||||||||||| ||||| |||||  ||| | ||||||  ||||| |||||||||||||||||||| ||||||||||||||||  |    
T  9344797 tggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaattggcact 9344698  T
Q  686 cttcctccatcccaaatca 704  Q
    |||| |||||||| |||||    
T  9344697 cttcttccatccccaatca 9344679  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 607 - 704
Target Start/End: Complemental strand, 9421395 - 9421298
Alignment:
Q  607 cttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatca 704  Q
    |||||||||||||||||  |||  |||  || |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  9421395 cttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatca 9421298  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 634 - 709
Target Start/End: Complemental strand, 9348911 - 9348836
Alignment:
Q  634 gacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatc 709  Q
    |||| |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  9348911 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatc 9348836  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 584 - 723
Target Start/End: Original strand, 9645593 - 9645735
Alignment:
Q  584 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattgg-- 681  Q
    |||||||||| || |||||||| ||||||||| |||| ||  |||  ||||||| |||| || || | |||||||||||||| |||||||||||||||      
T  9645593 actggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcaatatgattcgctttcgatcggtttgttccaattggct 9645692  T
Q  682 -cgttcttcctccatcccaaatcaccatccaaatttaaccatc 723  Q
     || ||||||||  |||||||||||||||  ||||||||||||    
T  9645693 tcgctcttcctctgtcccaaatcaccatctcaatttaaccatc 9645735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 708
Target Start/End: Original strand, 9613068 - 9613192
Alignment:
Q  584 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 683  Q
    ||||||||||||| || || || ||||||||||| |||||  ||  ||| |||| ||||||||| || ||||  ||||||||| ||||||| |  |||||    
T  9613068 actggtctgaacttcctaaagaacttctgaatctcatatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaacgtggcg 9613167  T
Q  684 ttcttcctccatcccaaatcaccat 708  Q
     ||||||||||||||||||||||||    
T  9613168 ctcttcctccatcccaaatcaccat 9613192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 646 - 709
Target Start/End: Complemental strand, 9433766 - 9433703
Alignment:
Q  646 gatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatc 709  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |||| |||||| ||||    
T  9433766 gatctcattcgcttccgatcagtttgttcccattggcgttcttcctcgatccaaaatcatcatc 9433703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 709
Target Start/End: Original strand, 9494003 - 9494126
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgtt 685  Q
    ||||||| ||| |||| ||||||| |||||||||||||  |    |||||||  ||| ||||||||||||||||||||||||| |||| ||||||||| |    
T  9494003 tggtctgcactcccgatggatcttgtgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaattggcgct 9494102  T
Q  686 cttcctccatcccaaatcaccatc 709  Q
    |||| ||||| | ||| |||||||    
T  9494103 cttcttccattcgaaagcaccatc 9494126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 644 - 719
Target Start/End: Original strand, 9616710 - 9616788
Alignment:
Q  644 tcgatctcattcgctttcgatcagtttgttccaattggcgt---tcttcctccatcccaaatcaccatccaaatttaac 719  Q
    |||||||||||||||||||||| || |||||||||||||||   ||||||||| || ||||||||||||  ||||||||    
T  9616710 tcgatctcattcgctttcgatcggtatgttccaattggcgtcgctcttcctccgtctcaaatcaccatctcaatttaac 9616788  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 634 - 723
Target Start/End: Original strand, 9625753 - 9625845
Alignment:
Q  634 gacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgt---tcttcctccatcccaaatcaccatccaaatttaaccatc 723  Q
    |||| |||| |||||||||| ||||||||||| ||||||||||||||||||   ||||||||| || || |||||||||  | ||||||||||    
T  9625753 gacatcgaaatcgatctcatacgctttcgatctgtttgttccaattggcgtcgctcttcctccgtctcagatcaccatctcagtttaaccatc 9625845  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 681
Target Start/End: Complemental strand, 9449196 - 9449155
Alignment:
Q  640 gaactcgatctcattcgctttcgatcagtttgttccaattgg 681  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  9449196 gaactcgatctcattcgttttcgatcagtttgttccatttgg 9449155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 708
Target Start/End: Complemental strand, 9353825 - 9353757
Alignment:
Q  640 gaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccat 708  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||| |||||| | || |||||| |||||    
T  9353825 gaacttgatctcattcgttttcgatcagtttgttcaacttggcgctcttccccgattccaaatgaccat 9353757  T

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Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 607 - 704
Target Start/End: Complemental strand, 18571994 - 18571897
Alignment:
Q  607 cttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatca 704  Q
    |||||||||||||||||  ||| ||| ||    |||||||||||||||||||| ||||  |||||| |||| ||||||||||||||||||||||||||    
T  18571994 cttctgaatctgatatcgtaacgcattgatgttgaactcgatctcattcgcttccgattggtttgtcccaaatggcgttcttcctccatcccaaatca 18571897  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 682
Target Start/End: Original strand, 28177059 - 28177140
Alignment:
Q  601 aaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggc 682  Q
    ||||||||||| |||||||||||  ||||  ||||||| ||| ||||||||||| | |||||||| ||||||||||||||||    
T  28177059 aaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttccaattggc 28177140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 704
Target Start/End: Complemental strand, 7047703 - 7047639
Alignment:
Q  640 gaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatca 704  Q
    |||||||||||||||||||| |||||||||||||| |  ||||| ||||||||| ||||||||||    
T  7047703 gaactcgatctcattcgcttccgatcagtttgttcaacatggcgctcttcctccgtcccaaatca 7047639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 682
Target Start/End: Original strand, 28219811 - 28219907
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggc 682  Q
    |||||| |||| || ||||||||||| |||||||||||  ||||  ||||||| ||| ||||||||||||  |||||||| |||| |||||||||||    
T  28219811 tggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattccaattggc 28219907  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 704
Target Start/End: Complemental strand, 28133180 - 28133077
Alignment:
Q  601 aaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaa 700  Q
    ||||||||||| |||||||||||  |||   ||| ||  |||||||||| |||||| ||| |||||||||||| ||||||||  ||||| ||||| ||||    
T  28133180 aaggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaa 28133081  T
Q  701 atca 704  Q
    ||||    
T  28133080 atca 28133077  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 601 - 704
Target Start/End: Complemental strand, 28177282 - 28177179
Alignment:
Q  601 aaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaa 700  Q
    ||||||||||| |||||||||||  |||   ||||||  ||||||||||||||||| |||||||  ||| |||||||||| |  ||||| ||||| ||||    
T  28177282 aaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttccaattgacactcttcttccattccaa 28177183  T
Q  701 atca 704  Q
    ||||    
T  28177182 atca 28177179  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 710
Target Start/End: Original strand, 9158652 - 9158778
Alignment:
Q  584 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 683  Q
    ||||| || |||| || ||||||||||| |||||||||||  |||  ||| |   |||| | |||||||||||||||| |||||||||||| |  |||||    
T  9158652 actggactaaacttccaaaggatcttctcaatctgatatcacaacgaatcaatgacgaagttgatctcattcgctttcaatcagtttgttcaacatggcg 9158751  T
Q  684 ttcttcctccatcccaaatcaccatcc 710  Q
     ||||||||| |||| ||||| |||||    
T  9158752 ctcttcctccgtccccaatcatcatcc 9158778  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 710
Target Start/End: Complemental strand, 9171716 - 9171650
Alignment:
Q  644 tcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatcc 710  Q
    |||||||||||||||||| |||||||||||| |  ||||| ||||||||| |||| ||||| |||||    
T  9171716 tcgatctcattcgctttcaatcagtttgttcaacatggcgctcttcctccgtccccaatcatcatcc 9171650  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 680
Target Start/End: Complemental strand, 28220049 - 28219970
Alignment:
Q  601 aaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattg 680  Q
    ||||||||||| |||||||||||  |||   ||||||  ||||||||||||||||| |||||||| ||| ||| ||||||    
T  28220049 aaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttcaattg 28219970  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 639 - 709
Target Start/End: Complemental strand, 7030658 - 7030588
Alignment:
Q  639 cgaactcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaatcaccatc 709  Q
    |||| ||||||||||||| ||||||||||||||||| |   |||| |||||||| ||||| ||||| ||||    
T  7030658 cgaagtcgatctcattcgatttcgatcagtttgttcgacacggcgctcttcctcaatccccaatcatcatc 7030588  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 701
Target Start/End: Complemental strand, 7026646 - 7026589
Alignment:
Q  644 tcgatctcattcgctttcgatcagtttgttccaattggcgttcttcctccatcccaaa 701  Q
    |||||||||||| ||| |||||||||||||| |  ||||| ||||||||| |||||||    
T  7026646 tcgatctcattcacttccgatcagtttgttcaacctggcgctcttcctccgtcccaaa 7026589  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 682
Target Start/End: Original strand, 20309 - 20405
Alignment:
Q  586 tggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggc 682  Q
    |||||| |||| || ||||||||||| |||||||||||  ||||  ||||||| ||| ||||||||||||  |||||||| |||| |||||||||||    
T  20309 tggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattccaattggc 20405  T

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Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 680
Target Start/End: Complemental strand, 20547 - 20468
Alignment:
Q  601 aaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattg 680  Q
    ||||||||||| |||||||||||  |||   ||||||  ||||||||||||||||| |||||||| ||| ||| ||||||    
T  20547 aaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttcaattg 20468  T

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