View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4786-Insertion-3 (Length: 702)
Name: NF4786-Insertion-3
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4786-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Complemental strand, 44567972 - 44567494
Alignment:
| Q |
7 |
acctacaacacatatatttctagttgagaatggaactaaggagtgttatagtaaattaacaaatttcaatcacagaattagacaacatcaaaatcaagca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567972 |
acctacaacacatatatttctagttgagaatggaactaaggagtgttatagtaaattaacaaatttcaatcacagaattagacaacatcaaaatcaagca |
44567873 |
T |
|
| Q |
107 |
ttagaatcacaatagtaaaggaacgtgacaaaacatagaggcatacctcttcatatttgcttcggaaaggcccgtgagaagtcacgatgtaaggttgaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567872 |
ttagaatcacaatagtaaaggaacgtgacaaaacatagaggcatacctcttcatatttgcttcggaaaggcccgtgagaagtcacgatgtaaggttgaaa |
44567773 |
T |
|
| Q |
207 |
ataacttggtactgaaaagttggactctggagagctctcatactgttgaaagtatgcaggtatggaaagagagaagaacaatgacagtccaactataatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567772 |
ataacttggtactgaaaagttggactctggagagctctcatactgttgaaagtatgcaggtatggaaagagagaagaacaatgacagtccaactataatg |
44567673 |
T |
|
| Q |
307 |
atatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccagcaaccatggctt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567672 |
atatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccagcaaccatggctt |
44567573 |
T |
|
| Q |
407 |
caggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaagttagacatggtatatttgtgatat |
485 |
Q |
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| T |
44567572 |
caggaattgaagcaatgaaccctccgaccttccctgttatatagtaaaagtaaaattagacatggtatatttgtgatat |
44567494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 64 - 471
Target Start/End: Original strand, 36028897 - 36029299
Alignment:
| Q |
64 |
aacaaatttcaatcacagaattagacaacatcaaaatcaagcattagaatcacaatagtaaaggaacgtgacaaaacatagaggcatacctcttcatatt |
163 |
Q |
| |
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|||||||||||||| ||||||| | | |||||||||||||||| | | || ||||||||||||||| ||||| | |||||||||| || |||||| |
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| T |
36028897 |
aacaaatttcaatcgcagaattt-ataccatcaaaatcaagcataatattcgcaatagtaaaggaacatgacaca-----gaggcatacccctccatatt |
36028990 |
T |
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| Q |
164 |
tgcttcggaaaggcccgtgagaagtcacgatgtaaggttgaaaataacttggtactgaaaagttggactctggagagctctcatactgttgaaagtatgc |
263 |
Q |
| |
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||||| |||||||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||||| | ||||||| | |||| |||||||||||||| |
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| T |
36028991 |
tgctttggaaaggcccgtgagaagccacaatgtaaggctgaaaataacttggcactgacaagttggaatttggagagatgccatattgttgaaagtatgc |
36029090 |
T |
|
| Q |
264 |
aggtatggaaagagagaagaacaatgacagtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattggacaagcctaatgctgta |
363 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| |||||||| ||||||||||| | |||| |||||||||||||||||||||| ||||||||| |
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| T |
36029091 |
gggtatggaaagagagaagaacaatgataatccaattattatgatattgcgagagcttccagcctcactatagcgtagattggacaagcccaatgctgta |
36029190 |
T |
|
| Q |
364 |
agcatcgcccacataatgcagaggagaccagcaaccatggcttcaggaattgaagcaatgaaccctccgaccttccctgtt-atatagtaaaagtaaagt |
462 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| | |
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| T |
36029191 |
agcattgcccacataaagcagaggagaccagcaaccatgactccaggaattgaagcaatgaaccctccaaccttccctgttaatatagtaaaagcaaaat |
36029290 |
T |
|
| Q |
463 |
tagacatgg |
471 |
Q |
| |
|
|| |||||| |
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|
| T |
36029291 |
taaacatgg |
36029299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 550 - 702
Target Start/End: Complemental strand, 44567429 - 44567275
Alignment:
| Q |
550 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacacaaa--caaataagctcaagggtgt |
647 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
44567429 |
atgaagcaatgaagtactactaggaggaaggaaaaggcgtccttcaagattaacaaataaactaaataaagaacaaaaaaacaaataagctcaagggtgt |
44567330 |
T |
|
| Q |
648 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatgga |
702 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44567329 |
atcaaggtagctaatgtttctaattctgttgaacggctgttcgtcacaatatgga |
44567275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 146 - 431
Target Start/End: Complemental strand, 20126718 - 20126433
Alignment:
| Q |
146 |
ggcatacctcttcatatttgcttcggaaaggcccgtgagaagtcacgatgtaaggttgaaaataacttggtactgaaaagttggactctggagagctctc |
245 |
Q |
| |
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|||||||| || |||||||||| |||||||||||||||||| || ||||| || |||||||||||||| || || | |||||| | |||||| | | |
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| T |
20126718 |
ggcatacccctccatatttgctgtggaaaggcccgtgagaagcaacaatgtagggctgaaaataacttggcacagacacgttggaattcggagagatgcc |
20126619 |
T |
|
| Q |
246 |
atactgttgaaagtatgcaggtatggaaagagagaagaacaatgacagtccaactataatgatatttcgagagcttccggtctcagtatagcgtagattg |
345 |
Q |
| |
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||| ||||||||||| ||||||| |||||||||||| |||||||| | |||||||| |||||||| ||||||||||||| |||| | ||||||||||| |
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| T |
20126618 |
atattgttgaaagtaggcaggtacggaaagagagaaaaacaatgataacccaactatgatgatattgcgagagcttccggcctcactgtagcgtagattt |
20126519 |
T |
|
| Q |
346 |
gacaagcctaatgctgtaagcatcgcccacataatgcagaggagaccagcaaccatggcttcaggaattgaagcaatgaaccctcc |
431 |
Q |
| |
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|||||||| | ||||| ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20126518 |
gacaagccccaagctgtgagcattgcccacatgaagcagaggagaccagcaaccataacttcaggaattgaagcaatgaaccctcc |
20126433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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