View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4786-Insertion-4 (Length: 567)

Name: NF4786-Insertion-4
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4786-Insertion-4
NF4786-Insertion-4
[»] chr2 (1 HSPs)
chr2 (7-567)||(7372330-7372885)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Original strand, 7372330 - 7372885
Alignment:
Q  7 ataaggaaggaaaatcaagatggtagtctaaataaattcaaagcaaaagctatggcaaaaggtttggattaaagtcaaggttttgattttcacgatacct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7372330 ataaggaaggaaaatcaagatggtagtctaaataaattcaaagcaaaagctatggcaaaaggtttggattaaagtcaaggttttgattttcacgatacct 7372429  T
Q  107 tctcacgcgttgtgaagtcaatcaccattcatattcttttaatcttgtctctgactcataagtggcttgtgcaacaaatagacattactaatgactttct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7372430 tctcacgcgttgtgaagtcaatcaccattcatattcttttaatcctgtctctgactcataagtggcttgtgca-caaatagacattactaatgactttct 7372528  T
Q  207 taatgaatttcttcaagaagtgtataagtgtaaaccaccaggaattacaaatgcttataaaaatatggtatgtagggttaaagcaggcaccaagggcgtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||    
T  7372529 taatgaatttcttcaagaagtgtataagtgtaaaccaccaggatttacaaatgcttatagaaatctggtatgtagggttaaagcaagcaccaagggcttg 7372628  T
Q  307 atatgaatgctcgatatcttttttgcttcaaattggtttaggcgcagcggatgtgatccatctcttctcannnnnnnncttcataagaacgctattgtcc 406  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  7372629 atatgaatgctcaatatcttttttgcttcaaattggtttaggcgcagcggatgtgatccatctcttctcattttt----ttcataagaacgctattgtcc 7372724  T
Q  407 tctatgttttagtttaagtggatgatattttgattaatactccacctcttctcgtaatctcattcaagatctcactcacagctgaataatcaatttgctc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7372725 tctatgttttagtttaagtggatgatattttgattaatactccacttcttctcgtaatctcattcaagatctcattcacagctgaataatcaatttgctc 7372824  T
Q  507 aaaagaaacttggcaaattggactattttcaaggtcttgaagttaaatacttgtcttttgg 567  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7372825 taaagaaacttggcaaattggactattttcaaggtcttgaagttaaatacttgtcttttgg 7372885  T

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