View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4786-Insertion-5 (Length: 522)
Name: NF4786-Insertion-5
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4786-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 316 - 475
Target Start/End: Original strand, 26465254 - 26465413
Alignment:
| Q |
316 |
aaccaagaacaccctgtgaatcatgaactatcagtaaaagcacaaagtatgtcatagaaccattattcaaaatgattcagaacatgaagcatgaaacaga |
415 |
Q |
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| T |
26465254 |
aaccaagaacaccctgtgaattatgaattatcactaaaagcacaaagtatgcgatagaaccattattcaaaaccattcaaaacatgaagcatgaaataga |
26465353 |
T |
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| Q |
416 |
ccaagcaaataacataaccacttatcatcataactaacaacttcctagtttctttctcat |
475 |
Q |
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| T |
26465354 |
ccaggcaaataacataaccacttatcatcataattaacaacttcctagtttctttctcat |
26465413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 522
Target Start/End: Original strand, 26465413 - 26465445
Alignment:
| Q |
490 |
tatccatcaactaatttatcatcataactaaag |
522 |
Q |
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| T |
26465413 |
tatccatcaactaatttatcatcatagctaaag |
26465445 |
T |
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