View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4786-Insertion-7 (Length: 353)

Name: NF4786-Insertion-7
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4786-Insertion-7
NF4786-Insertion-7
[»] chr5 (5 HSPs)
chr5 (161-353)||(7433853-7434041)
chr5 (7-131)||(7433645-7433769)
chr5 (269-353)||(10505089-10505175)
chr5 (198-289)||(10523556-10523647)
chr5 (182-288)||(36130347-36130452)
[»] chr8 (7 HSPs)
chr8 (227-330)||(6312518-6312621)
chr8 (200-353)||(44260853-44261007)
chr8 (182-293)||(26024746-26024857)
chr8 (161-240)||(6312558-6312637)
chr8 (178-292)||(26024792-26024906)
chr8 (241-312)||(392107-392176)
chr8 (228-268)||(4378925-4378965)
[»] chr4 (6 HSPs)
chr4 (195-350)||(34747215-34747370)
chr4 (210-307)||(47547718-47547814)
chr4 (192-251)||(47547605-47547664)
chr4 (195-267)||(31199052-31199123)
chr4 (213-344)||(9127185-9127318)
chr4 (163-290)||(8492245-8492374)
[»] chr1 (11 HSPs)
chr1 (162-311)||(14587937-14588086)
chr1 (178-294)||(14588463-14588579)
chr1 (230-353)||(15256574-15256699)
chr1 (254-320)||(26921425-26921490)
chr1 (186-290)||(46572428-46572532)
chr1 (178-288)||(15256795-15256904)
chr1 (186-271)||(46572595-46572680)
chr1 (186-266)||(46572699-46572779)
chr1 (189-252)||(15256781-15256844)
chr1 (182-294)||(46572721-46572832)
chr1 (163-243)||(26921452-26921532)
[»] chr3 (3 HSPs)
chr3 (181-289)||(40542362-40542470)
chr3 (162-249)||(40542393-40542480)
chr3 (191-248)||(40542834-40542891)
[»] chr2 (1 HSPs)
chr2 (248-353)||(37772020-37772127)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 161 - 353
Target Start/End: Original strand, 7433853 - 7434041
Alignment:
Q  161 ctattttgtacatccaatagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaattt 260  Q
    |||||||||||||||||||||||| ||    || |||||||||||||||| |||| | ||||| | ||||||| |||||||||||||||||||||||||     
T  7433853 ctattttgtacatccaatagataacta----atgttcattttaaaaatttccattatctacctccggtagataactaccggatgttcatttttaaaattc 7433948  T
Q  261 catttttgtacctccgataaataactaccggattattgcccatttaaccttttgttttacataacactgacatcatccaaactttctctctca 353  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7433949 catttttgtacctccgatagataactacaagattattgcccatttaaccttttgttttacataacactgagatcatccaaactttctctctca 7434041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 7433645 - 7433769
Alignment:
Q  7 agaattttgtttctttttaaaaataaagaaagtttctactatttttggagaactatgttcattatgcttcaaattttgactggtttcggaacttgttctt 106  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  7433645 agaattttgtttcttttgaaaagtaaaaaaagtttctactatttttggagaactacgttcactatgcttcaaattttgactggtttcaaaacttgttctt 7433744  T
Q  107 gatttcatttaatagttattttgta 131  Q
    | ||||||||||||  |||||||||    
T  7433745 ggtttcatttaataactattttgta 7433769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 10505089 - 10505175
Alignment:
Q  269 tacctccgataaataactaccggattattgcccatttaaccttttgttttacataaca--ctgacatcatccaaactttctctctca 353  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||| |||||||    
T  10505089 tacctcagatagataactaccggattattgcccatttaaccttttgttttacataacaagcaaacatcatccaaactttttctctca 10505175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 10523647 - 10523556
Alignment:
Q  198 attttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactacc 289  Q
    ||||||||||||| |||||| |||||   ||||||| |||||||||||||||||| ||||||||  |||| |||||  | ||||||||||||    
T  10523647 attttaaaaatttccattttatacctttggtagataactaccggatgttcattttaaaaatttctattttctacctatggtaaataactacc 10523556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 36130347 - 36130452
Alignment:
Q  182 taattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaa 281  Q
    |||||||  ||| ||||||||||||||||  ||||| | ||  | ||||||| ||||||| |||||||||| ||||||||| |||| ||||||||||| |    
T  36130347 taattattagatgttcattttaaaaatttctattttgtgccctcggtagataactaccgggtgttcatttt-aaaatttcaattttctacctccgataga 36130445  T
Q  282 taactac 288  Q
    | |||||    
T  36130446 ttactac 36130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 6312621 - 6312518
Alignment:
Q  227 gtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactaccggattattgcccatttaaccttttgttttacataaca 326  Q
    ||||||| ||| |||||||||||||| ||||||||  |||| |||||||| || |||||||||| |||||||| |||||||| ||||||||||||||||     
T  6312621 gtagataactatcggatgttcattttaaaaatttcgattttctacctccgttagataactaccgaattattgctcatttaacattttgttttacataacc 6312522  T
Q  327 ctga 330  Q
    ||||    
T  6312521 ctga 6312518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 353
Target Start/End: Complemental strand, 44261007 - 44260853
Alignment:
Q  200 tttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactaccggattattgc 299  Q
    |||||||| ||||||||| |||||   |||||||  |  |||||||||||||| ||||||| ||||| |||||| ||||| ||||||| |||||||||||    
T  44261007 tttaaaaaatttcattttctacctctggtagataattgtcggatgttcattttaaaaatttgatttt-gtaccttcgatagataactaacggattattgc 44260909  T
Q  300 ccatttaaccttttgttttacataac--actgacatcatccaaactttctctctca 353  Q
    ||| ||| | | ||||||||||||||  ||  |||||||||| | |||||||||||    
T  44260908 ccacttagcatattgttttacataacaaacatacatcatccataatttctctctca 44260853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 293
Target Start/End: Original strand, 26024746 - 26024857
Alignment:
Q  182 taattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaa 281  Q
    |||||| | ||| ||||||||||||| ||||||||| |||||  |||||||| ||| ||||| |||||||| ||| ||||  |||||||| |||| ||||    
T  26024746 taattaccagatgttcattttaaaaaatttcattttgtacctttagtagataactatcggatattcattttaaaattttccattttgtacatccggtaaa 26024845  T
Q  282 taactaccggat 293  Q
    ||| ||| ||||    
T  26024846 taaatacaggat 26024857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 6312637 - 6312558
Alignment:
Q  161 ctattttgtacatccaatagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccg 240  Q
    |||||||||||||||  ||||||| |||||||| ||||||||||||||||  ||||| ||||| |  |||||| ||||||    
T  6312637 ctattttgtacatccggtagataactatcggatgttcattttaaaaatttcgattttctacctccgttagataactaccg 6312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 26024792 - 26024906
Alignment:
Q  178 tagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccga 277  Q
    ||||||| ||||||||||||||||||||| ||| |||||| ||| | | ||| |||  ||| |||||||||| || |||||||   |||| |||||| |     
T  26024792 tagataactatcggatattcattttaaaattttccattttgtacatccggtaaataaatacaggatgttcatgttaaaaatttgcattttctacctctgg 26024891  T
Q  278 taaataactaccgga 292  Q
    || ||||||||||||    
T  26024892 tagataactaccgga 26024906  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 392107 - 392176
Alignment:
Q  241 gatgttcatttttaaaatttcatttttgtacctccgataaataactaccggattattgcccatttaaccttt 312  Q
    |||||||||||  ||||||||||||| ||| | ||| || ||||||||||| ||||||||||||||||||||    
T  392107 gatgttcattta-aaaatttcatttt-gtatcaccggtagataactaccggtttattgcccatttaaccttt 392176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 4378925 - 4378965
Alignment:
Q  228 tagatatctaccggatgttcatttttaaaatttcatttttg 268  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  4378925 tagataactaccggatgttcattttaaaattttcatttttg 4378965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 350
Target Start/End: Original strand, 34747215 - 34747370
Alignment:
Q  195 ttcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactaccggatt 294  Q
    ||||| |||||||||| |||||| ||||| | |||| || ||||| |||||||||||  |||||| || ||| ||||||||| |  ||||||||| ||||    
T  34747215 ttcatattaaaaatttccattttctacctccggtagttagctaccagatgttcatttcaaaaattccacttt-gtacctccggtggataactacccgatt 34747313  T
Q  295 attgcccatttaaccttttgttttacataac--actgacatcatccaaactttctctc 350  Q
    ||||||||||||||| |||||||||||||||  || ||| ||||| ||||||||||||    
T  34747314 attgcccatttaacc-tttgttttacataacaaacagacgtcatcgaaactttctctc 34747370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 47547718 - 47547814
Alignment:
Q  210 ttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactaccggattattgcccatttaa 307  Q
    |||||||| ||||| ||||||||  ||| |||||||||||||| |||| || ||||| |||||||| |||||||| |||  |||||||||||||||||    
T  47547718 ttcattttctacctccagtagatgactatcggatgttcattttaaaaaatttatttt-gtacctcccataaataaatacttgattattgcccatttaa 47547814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 47547605 - 47547664
Alignment:
Q  192 atattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcattt 251  Q
    |||||||||||||||| ||||||||| ||||| ||||||||| ||| |||||||||||||    
T  47547605 atattcattttaaaaaatttcattttctacctccagtagataactatcggatgttcattt 47547664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 31199123 - 31199052
Alignment:
Q  195 ttcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcattttt 267  Q
    |||||||||||||||  |||||| ||| | | ||||||| |||||||||||||||||| ||||||||||||||    
T  31199123 ttcattttaaaaattc-cattttgtacatccggtagataactaccggatgttcattttaaaaatttcattttt 31199052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 9127185 - 9127318
Alignment:
Q  213 attttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataactaccggattattgcccatttaaccttt 312  Q
    ||||| ||||| | |||| || |||||| |||||| |||| ||| || ||| || ||| ||| |||| ||||||| |||||||||||||| |||||||||    
T  9127185 attttctacctccggtagttaactaccgaatgttccttttaaaagttacatatt-gtaactcagatagataactatcggattattgcccaattaaccttt 9127283  T
Q  313 tgtttt-acataac--actgacatcatccaaactt 344  Q
    | |||| |||||||  ||  |||||||||||||||    
T  9127284 ttttttgacataacaaacatacatcatccaaactt 9127318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 290
Target Start/End: Original strand, 8492245 - 8492374
Alignment:
Q  163 attttgtacatccaatagataattatcggatattcatttta--aaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaattt 260  Q
    |||||||| ||||  |||||||||||| ||| ||||||||   |||||||  ||||| | | | | ||||||| ||||||||||||| |||| |||||||    
T  8492245 attttgtatatccggtagataattatcagatgttcatttttttaaaatttcgattttgttcttccggtagataactaccggatgttccttttcaaaattt 8492344  T
Q  261 catttttgtacctccgataaataactaccg 290  Q
    |  ||||||  ||||| || ||||||||||    
T  8492345 cgattttgttactccggtagataactaccg 8492374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 14587937 - 14588086
Alignment:
Q  162 tattttgtacatccaatagataattatcggatattcattttaaaaat-tttcattttttacctacagtagatatctaccggatgttcatttttaaaattt 260  Q
    |||||||||||||   ||||||| || | ||| |||||||||||||  ||||||||| |||||  |||||||| ||||||  |||| ||||  |||||||    
T  14587937 tattttgtacatctggtagataactaccagatgttcattttaaaaaaatttcattttctacctctagtagatagctaccgattgttaatttaaaaaattt 14588036  T
Q  261 catttttgtacctccgataaataactaccggattattgcccatttaacctt 311  Q
    |||| | ||||||||| || || ||||||||||||||||||||||||||||    
T  14588037 cattat-gtacctccggtagatcactaccggattattgcccatttaacctt 14588086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 14588579 - 14588463
Alignment:
Q  178 tagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccga 277  Q
    |||||||||||||||| |||||||||||||||| |||||| ||  |  |||||||| |||| ||| ||||||||| ||||||| | |||| ||| ||||     
T  14588579 tagataattatcggatgttcattttaaaaatttacattttgtatatctagtagataactactggaagttcattttaaaaattttaattttatacatccgg 14588480  T
Q  278 taaataactaccggatt 294  Q
    || ||||||| ||||||    
T  14588479 tagataactatcggatt 14588463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 15256574 - 15256699
Alignment:
Q  230 gatatctaccggatgttcatttttaaaa-tttcatttttgtacctccgataaataactaccggattattgcccatttaaccttttgttttacataac--a 326  Q
    |||| ||| |||| ||||||||| |||| |||||||||  |||||| | | ||||||||||  |||| | |||||||||||||||||||||||||||  |    
T  15256574 gataactaacggaagttcattttaaaaaatttcattttc-tacctctggtgaataactaccaaattagtacccatttaaccttttgttttacataacaaa 15256672  T
Q  327 ctgacatcatccaaactttctctctca 353  Q
    | || ||||||||||||||||||||||    
T  15256673 cggatatcatccaaactttctctctca 15256699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 26921490 - 26921425
Alignment:
Q  254 aaaatttcatttttgtacctccgataaataactaccggattattgcccatttaaccttttgttttac 320  Q
    |||||||||||||| |||||||| || |||||| |||||||||||| |||||| |||||||||||||    
T  26921490 aaaatttcattttt-tacctccggtagataactgccggattattgctcatttagccttttgttttac 26921425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 46572532 - 46572428
Alignment:
Q  186 tatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataaataac 285  Q
    |||||||  ||||||||||||| ||||||||| ||||| | || |||| |||||| || |||||||| ||||||| | |||| |||||| | || |||||    
T  46572532 tatcggacgttcattttaaaaaatttcattttataccttcggtggataactaccgaatattcattttaaaaattttaattttatacctcaggtagataac 46572433  T
Q  286 taccg 290  Q
    |||||    
T  46572432 taccg 46572428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 15256904 - 15256795
Alignment:
Q  178 tagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttt-taaaatttcatttttgtacctccg 276  Q
    ||||||| |||| ||| |||||||||||| ||| |||||| ||||| | ||||||| | ||||||||||||||||  ||||||||| |||| ||||||||    
T  15256904 tagataactatcagatgttcattttaaaa-tttccattttatacctccggtagataaccaccggatgttcattttaaaaaatttca-ttttatacctccg 15256807  T
Q  277 ataaataactac 288  Q
     || ||||||||    
T  15256806 gtagataactac 15256795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 46572680 - 46572595
Alignment:
Q  186 tatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtac 271  Q
    ||||| || ||||||||||||| ||||||||| ||| |  |||| || ||||||||||||||||||| ||||| ||  ||||||||    
T  46572680 tatcgaatgttcattttaaaaaatttcattttgtacatctagtaaatgtctaccggatgttcattttaaaaatctccattttgtac 46572595  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 46572779 - 46572699
Alignment:
Q  186 tatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttt 266  Q
    |||||||| |||||||||||||| |||||||| ||| |   ||| ||| ||||||||| |||||||| ||| |||||||||    
T  46572779 tatcggatgttcattttaaaaatcttcattttgtacatctggtatataactaccggattttcattttaaaattttcatttt 46572699  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 15256844 - 15256781
Alignment:
Q  189 cggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttt 252  Q
    ||||| ||||||||||||| ||||||||| ||||| | ||||||| ||||  ||||||||||||    
T  15256844 cggatgttcattttaaaaaatttcattttatacctccggtagataactacttgatgttcatttt 15256781  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 46572832 - 46572721
Alignment:
Q  182 taattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaat-ttcatttttgtacctccgataa 280  Q
    |||||||||||| ||||||| ||||||||  || |||||||| | |||| |  ||| |||||||||||||| ||||| |||||||| |||| || | ||     
T  46572832 taattatcggatgttcatttaaaaaattta-atgttttacctccggtagttgactatcggatgttcattttaaaaatcttcatttt-gtacatctggtat 46572735  T
Q  281 ataactaccggatt 294  Q
    ||||||||||||||    
T  46572734 ataactaccggatt 46572721  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 26921532 - 26921452
Alignment:
Q  163 attttgtacatccaatagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggat 243  Q
    ||||||| |||||  |||||||  |||| || || |||||||||| ||||||||||||||| | ||||||| || ||||||    
T  26921532 attttgtgcatcccgtagataacaatcgaatgtttattttaaaaaatttcattttttacctccggtagataactgccggat 26921452  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 40542362 - 40542470
Alignment:
Q  181 ataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcatttttaaaatttcatttttgtacctccgataa 280  Q
    |||| ||| |||||||||||||||||||| | ||||| ||  | | ||||||| ||||||||||||||||||||||||||   |||| |||||| | ||     
T  40542362 ataactattggatattcattttaaaaattcttattttgtatatccggtagataactaccggatgttcatttttaaaattttcattttctacctctggtag 40542461  T
Q  281 ataactacc 289  Q
    |||||||||    
T  40542462 ataactacc 40542470  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 40542393 - 40542480
Alignment:
Q  162 tattttgtacatccaatagataattatcggatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttcat 249  Q
    ||||||||| ||||  ||||||| || ||||| |||||||| |||||||||||||| |||||   ||||||| |||||  ||||||||    
T  40542393 tattttgtatatccggtagataactaccggatgttcatttttaaaattttcattttctacctctggtagataactaccaaatgttcat 40542480  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 40542891 - 40542834
Alignment:
Q  191 gatattcattttaaaaattttcattttttacctacagtagatatctaccggatgttca 248  Q
    |||||||||||||||| ||| |||||| |||||   ||||||| ||||||||||||||    
T  40542891 gatattcattttaaaattttccattttctacctctggtagataactaccggatgttca 40542834  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 353
Target Start/End: Original strand, 37772020 - 37772127
Alignment:
Q  248 atttttaaaatttcatttttgtacctccgataaataactaccggattattgcccatttaaccttttgttttacataaca--ctgacatcatccaaacttt 345  Q
    ||||| ||||||||  |||| |||||||| || ||||||| || | |||| | |||||||||||||| ||||| |||||  |  | ||||||||||||||    
T  37772020 attttaaaaatttctattttctacctccggtagataactatcgaaatatttctcatttaaccttttggtttacttaacagacaaatatcatccaaacttt 37772119  T
Q  346 ctctctca 353  Q
    ||||||||    
T  37772120 ctctctca 37772127  T

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