View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4786_high_1 (Length: 344)

Name: NF4786_high_1
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4786_high_1
NF4786_high_1
[»] chr1 (7 HSPs)
chr1 (288-344)||(7009007-7009063)
chr1 (288-335)||(32086481-32086528)
chr1 (288-344)||(24527665-24527721)
chr1 (293-335)||(41712764-41712806)
chr1 (288-344)||(40498616-40498672)
chr1 (288-344)||(51002061-51002117)
chr1 (288-344)||(51776028-51776084)
[»] chr4 (5 HSPs)
chr4 (293-344)||(22301787-22301838)
chr4 (293-344)||(37683304-37683355)
chr4 (293-344)||(8713228-8713279)
chr4 (288-344)||(24896984-24897040)
chr4 (288-335)||(22847103-22847150)
[»] chr6 (3 HSPs)
chr6 (288-344)||(6925776-6925832)
chr6 (288-335)||(23350353-23350400)
chr6 (288-344)||(31091174-31091230)
[»] chr7 (2 HSPs)
chr7 (288-336)||(10594083-10594131)
chr7 (288-344)||(24980854-24980910)
[»] chr2 (2 HSPs)
chr2 (288-344)||(26170975-26171031)
chr2 (293-335)||(45443594-45443636)
[»] chr8 (3 HSPs)
chr8 (293-344)||(12722560-12722611)
chr8 (293-344)||(31793878-31793929)
chr8 (288-344)||(41942390-41942446)
[»] chr5 (7 HSPs)
chr5 (288-335)||(12189345-12189392)
chr5 (293-335)||(18978454-18978496)
chr5 (293-335)||(43548622-43548664)
chr5 (288-344)||(10666167-10666223)
chr5 (288-344)||(18864429-18864485)
chr5 (288-344)||(36294180-36294236)
chr5 (288-344)||(40738891-40738947)
[»] chr3 (2 HSPs)
chr3 (288-335)||(44354549-44354596)
chr3 (288-344)||(36885782-36885838)


Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 7009007 - 7009063
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  7009007 agagtttttctaatcacaccctgtttaatcctggttacaccccaaaataacaaaatt 7009063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 32086481 - 32086528
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  32086481 agagtttttctaattacaccctgtttaatcctgattgcaccccaaaat 32086528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 24527721 - 24527665
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||||||  |||||||    
T  24527721 agagtttttctaatcacaccctgtttaatcctgattgcattccaaaatgccaaaatt 24527665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 41712764 - 41712806
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    ||||||||| |||||||||||||||||| || |||||||||||    
T  41712764 ttttctaattacaccctgtttaatcctggttgcaccccaaaat 41712806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 40498616 - 40498672
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||| ||| || |||||||||||  |||||||    
T  40498616 agagtttttctaattacaccctgtttaattctggttgcaccccaaaatgacaaaatt 40498672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 51002117 - 51002061
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| | ||||||||||||||||||| ||||| |||||  |||||||    
T  51002117 agagtttttctaattataccctgtttaatcctgattgcaccctaaaatgacaaaatt 51002061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 51776028 - 51776084
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || || ||||||||  |||||||    
T  51776028 agagtttttctaattacaccctgtttaatcctggttgcatcccaaaatgacaaaatt 51776084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 22301838 - 22301787
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  22301838 ttttctaatcacaccctgtttaatcctggttgcaccccaaaataacaaaatt 22301787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 37683355 - 37683304
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  37683355 ttttctaatcacaccctgtttaatcctggttacactccaaaatgtcaaaatt 37683304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 8713228 - 8713279
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||||||||||||||||||||||||||  ||||||||||||||  |||||||    
T  8713228 ttttctaatcacaccctgtttaatccttgttacaccccaaaatgacaaaatt 8713279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 24896984 - 24897040
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| ||||| |||||||||||| ||||||||||||||  |||||||    
T  24896984 agagtttttctaattacaccttgtttaatcctggttacaccccaaaatgacaaaatt 24897040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 22847103 - 22847150
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    |||| ||||||||| |||||||||||||||||| || |||||||||||    
T  22847103 agagtttttctaattacaccctgtttaatcctggttgcaccccaaaat 22847150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 6925776 - 6925832
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||  |||||||    
T  6925776 agagtttttctaattacaccctgtttaatcctgattgcaccccaaaatgacaaaatt 6925832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 23350353 - 23350400
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    |||| ||||||||| |||||||||||||||||| || |||||||||||    
T  23350353 agagtttttctaattacaccctgtttaatcctggttgcaccccaaaat 23350400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 31091230 - 31091174
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| ||||| |||||||||||| || |||||||||||  |||||||    
T  31091230 agagtttttctaattacaccatgtttaatcctggttgcaccccaaaatgacaaaatt 31091174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 10594083 - 10594131
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaata 336  Q
    |||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  10594083 agagtttttctaattacaccctgtttaatcctggttgcaccccaaaata 10594131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 24980854 - 24980910
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || ||||| |||||  |||||||    
T  24980854 agagtttttctaattacaccctgtttaatcctggttgcaccctaaaatgacaaaatt 24980910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 26170975 - 26171031
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| ||||||||||||||| || || |||||||||||| |||||||    
T  26170975 agagtttttctaattacaccctgtttaatcttggttgcaccccaaaataacaaaatt 26171031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 45443636 - 45443594
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||    
T  45443636 ttttctaattacaccatgtttaatcctgattacacctcaaaat 45443594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 12722560 - 12722611
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    ||||||||| |||||||||||||||||| || |||||||||||  |||||||    
T  12722560 ttttctaattacaccctgtttaatcctggttgcaccccaaaatgacaaaatt 12722611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 31793929 - 31793878
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    ||||||||| |||||||||||||||||| || |||||||||||  |||||||    
T  31793929 ttttctaattacaccctgtttaatcctggttgcaccccaaaatgacaaaatt 31793878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 41942446 - 41942390
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || || ||||||||  |||||||    
T  41942446 agagtttttctaattacaccctgtttaatcctggttgcatcccaaaatgacaaaatt 41942390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 12189392 - 12189345
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    |||| ||||||||| ||||| |||||||||||| ||||||||||||||    
T  12189392 agagtttttctaattacaccttgtttaatcctggttacaccccaaaat 12189345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 18978454 - 18978496
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    ||||||||| |||||||||||||||||| || |||||||||||    
T  18978454 ttttctaattacaccctgtttaatcctggttgcaccccaaaat 18978496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 43548664 - 43548622
Alignment:
Q  293 ttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    ||||||||| |||||||||||||||||| || |||||||||||    
T  43548664 ttttctaattacaccctgtttaatcctggttgcaccccaaaat 43548622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 10666223 - 10666167
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| |||| |||| |||||||||||||||||| || |||||||||||  |||||||    
T  10666223 agagtttttataattacaccctgtttaatcctggttgcaccccaaaatgacaaaatt 10666167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 18864429 - 18864485
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || ||||| |||||  |||||||    
T  18864429 agagtttttctaattacaccctgtttaatcctggttgcaccctaaaatgacaaaatt 18864485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 36294180 - 36294236
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| ||||| ||||||||| || ||||||||||||||  |||||||    
T  36294180 agagtttttctaattacaccatgtttaatcatggttacaccccaaaatgacaaaatt 36294236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 40738891 - 40738947
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || ||||| |||||  |||||||    
T  40738891 agagtttttctaattacaccctgtttaatcctggttgcaccctaaaatgacaaaatt 40738947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 44354596 - 44354549
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaat 335  Q
    |||| ||||||||| |||||||||||||||||| || |||||||||||    
T  44354596 agagtttttctaattacaccctgtttaatcctggttgcaccccaaaat 44354549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 36885838 - 36885782
Alignment:
Q  288 agaggttttctaatcacaccctgtttaatcctgattacaccccaaaatatcaaaatt 344  Q
    |||| ||||||||| |||||||||||||||||| || ||||| |||||  |||||||    
T  36885838 agagtttttctaattacaccctgtttaatcctggttgcaccctaaaatgacaaaatt 36885782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University