View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4786_high_2 (Length: 256)
Name: NF4786_high_2
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4786_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 15284557 - 15284332
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15284557 |
aatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcata |
15284458 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcatttt |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15284457 |
taagcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcatttt |
15284358 |
T |
|
| Q |
220 |
ccacttcctctatctcaacacttctt |
245 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15284357 |
ccacttcctctatctcaacacttctt |
15284332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 15287358 - 15287516
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
15287358 |
aatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcatg |
15287457 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctc |
178 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||||||||||| |||| ||| | |||||| |
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|
| T |
15287458 |
taaggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctc |
15287516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 15263068 - 15262929
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| || || | || |||||||||||||| |
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|
| T |
15263068 |
aatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttcgcgaacggaaaaggattcatg |
15262969 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaatt |
159 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
15262968 |
taagcacctggatgaccatctggtctcaacaatgccaatt |
15262929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 15256687 - 15256839
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
|||||||||||| || ||||||||||| || || |||||||||||||||||||| || ||| || |||||| ||||| ||||||||||||| | |||| |
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|
| T |
15256687 |
aatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaacaccattggcaaatggaaaagggtacata |
15256786 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaag |
172 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
15256787 |
taaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 15265213 - 15265357
Alignment:
| Q |
21 |
atctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcatat |
120 |
Q |
| |
|
||||||||||| ||||| || ||||| || || ||||||||||||||||||||||| |||| || | |||| ||||| | ||||||||||||||||||| |
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|
| T |
15265213 |
atctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaaccccattaaagaatggaaaaggattcatat |
15265312 |
T |
|
| Q |
121 |
aagcacctgcatgaccatctggtctcaacaatgccaattttgtta |
165 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||| ||||||||||||| |
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|
| T |
15265313 |
aaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 51383742 - 51383517
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |
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|
| T |
51383742 |
aatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccattagcaaatggaaaaggattcatg |
51383643 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcatttt |
219 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||| | ||||||||| |
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|
| T |
51383642 |
taggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctccaaattaaatcccaattgttcagcttttgacttagcatttt |
51383543 |
T |
|
| Q |
220 |
ccacttcctctatctcaacacttctt |
245 |
Q |
| |
|
||||||||||||||||| ||||||| |
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|
| T |
51383542 |
tcacttcctctatctcaatacttctt |
51383517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 44248003 - 44248228
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccattta-caaatggaaaaggattcat |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
44248003 |
aatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaac-ccttttagcaaatggaaaaggattcat |
44248101 |
T |
|
| Q |
119 |
ataagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcattt |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| | |||||||| |
|
|
| T |
44248102 |
ataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattt |
44248201 |
T |
|
| Q |
219 |
tccacttcctctatctcaacacttctt |
245 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
44248202 |
tcagcttcctctatctcaatacttctt |
44248228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 11806921 - 11807146
Alignment:
| Q |
20 |
aatctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcattttgtacatattttggaactccatttacaaatggaaaaggattcata |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||| ||||||| | || ||||||||||||||| | || |
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|
| T |
11806921 |
aatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgttttagcaaatggaaaaggataccta |
11807020 |
T |
|
| Q |
120 |
taagcacctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcatttt |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| || ||||||||| |
|
|
| T |
11807021 |
taagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtttagatttttccttagcatttt |
11807120 |
T |
|
| Q |
220 |
ccacttcctctatctcaacacttctt |
245 |
Q |
| |
|
| ||||||||||||| | ||||||| |
|
|
| T |
11807121 |
cagcttcctctatctccatacttctt |
11807146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 6543659 - 6543709
Alignment:
| Q |
23 |
ctcattccaagtatctataggtcctggtaagcaccaatgaacacaatcatt |
73 |
Q |
| |
|
||||||||| ||||| | |||||| ||||| |||||||||||||||||||| |
|
|
| T |
6543659 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
6543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
28 |
tccaagtatctataggtcctggtaagcaccaatgaacacaatcatt |
73 |
Q |
| |
|
|||| ||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
|
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