View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4786_low_3 (Length: 241)
Name: NF4786_low_3
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4786_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37722529 - 37722769
Alignment:
| Q |
1 |
cagagatgacataaaagtctcattttcacatgtatgtagtgttagtctt-agacaaaagaaaaggacaacctcaactcaactcaagctgc---catacct |
96 |
Q |
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| T |
37722529 |
cagagatgacataaaagtctcattttcacatgtatgtagtgttagtctttagacaaaagaaaaggacaacctcaactcaactcaagctgctgccatacct |
37722628 |
T |
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| Q |
97 |
attcttggtacctaccgctacactgttccttcctctctttcttttggattggaaactatgaagcttcaaaaatggctcactagtgtgttcttgctcactc |
196 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37722629 |
attcttggtacc----gctacactgttccttcctctctttcttttggattggaaactatgaagcttcaaaaatggctcactagtttgttcttgctcactc |
37722724 |
T |
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| Q |
197 |
ttgccactataaacaatgtattaggtaatttatgctacactcctt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37722725 |
ttgccactataaacaatgtattaggtaatttatgctacactcctt |
37722769 |
T |
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