View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4786_low_4 (Length: 238)
Name: NF4786_low_4
Description: NF4786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4786_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10842437 - 10842198
Alignment:
| Q |
1 |
ccatttcttcttcttttaagggaggataatttctctatcaatttcatcatcatgcatccattagtcacaccattggtcgcacatattgggatctacatcc |
100 |
Q |
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| T |
10842437 |
ccatttcttcttcttttaagggaggataatttctctatcaatttcatcatcatgcatccattagtcacaccatcggtcgcacatattgggatctacatcc |
10842338 |
T |
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| Q |
101 |
caaacaaaatggccatatactttgtcagtatagataggcttgcc--agtgacaacataaataggacaccaaccttcttcaattattggttgtatgatcat |
198 |
Q |
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| T |
10842337 |
caaacaaaatggccatatactttgtcagtatagataggcttgccttagtgacaacataaataggacaccaatcttcttcaattattggttgtatgatcat |
10842238 |
T |
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| Q |
199 |
ggtttgaaaaatatgataagccaaacttggtccattatct |
238 |
Q |
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| T |
10842237 |
ggtttgaaaaatatgataagccaaacttggcccattatct |
10842198 |
T |
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