View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4787-Insertion-1 (Length: 538)
Name: NF4787-Insertion-1
Description: NF4787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4787-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 166 - 537
Target Start/End: Original strand, 24776583 - 24776977
Alignment:
| Q |
166 |
gacataatttaaagttgttttcattttctattgggattggtgtgatacataacatgccactttcacctact----------------------tttatcg |
243 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
24776583 |
gacagaatttaaagttgttttcattttctattgggattggtgtgatacgtaacatgccattttcacatacttatgccattttcacatacttgttttatcg |
24776682 |
T |
|
| Q |
244 |
taataacacttttatagaccaaatnnnnnnnt-tactcaaagaacaaagaaacaaaccaaccttatattgttccttaacgtctttctcagtccttccaca |
342 |
Q |
| |
|
|||||||| || |||||||||||| ||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
24776683 |
taataacaattgtatagaccaaataaaaacaaatactcgaacaacaaaggaacaaaccaaccttatagtgctccttaacgtctttctcagtccttccaca |
24776782 |
T |
|
| Q |
343 |
tgcctcagcaagtgtcttaataacagcagctttaccaattcccatttctaaaccttgatacggtggagcaatcctgtttgaaaatagatacacaactggt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24776783 |
tgcctcagcaagtgtcttaataacagcagctttaccaactcccatttctaaaccttgatacggtggagcaatcctgtttgaaaatagatacacaactggt |
24776882 |
T |
|
| Q |
443 |
aataaatcaccaggcgtagtatgcatcactgtcctcaaaacattacaaccaatatccgacattgcattcctccctttctcttccttgatcatgtc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24776883 |
aataaatcaccaggcgtagtatgcatcactgtcctcaagacattacaaccaatatccgacatcgcattcctccctttctcttccttgatcatgtc |
24776977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 24775997 - 24776155
Alignment:
| Q |
8 |
ctaaacaccctttccgtcacctccctcaaaacctccaccaaacccataacaccctccaatatgttgtaggccgttataaccatgaaactaacgcactctt |
107 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
24775997 |
ctaaacaccctttcctccacctccc-caaaacctccaccaaacccataacaccctccaatattttataggccgttttaaccgtgaaactaccgcactctt |
24776095 |
T |
|
| Q |
108 |
ctggtatattcaattatagaacagattcgaaccaacattcataaaacaagcaagtgcaga |
167 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24776096 |
ccggtataatcaattatagaacagattcgaaccaacattcataaaacaagcaagtgcaga |
24776155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University