View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4787_low_1 (Length: 349)
Name: NF4787_low_1
Description: NF4787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4787_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 6579974 - 6580296
Alignment:
| Q |
18 |
tttaattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgtaatacgaat |
117 |
Q |
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| T |
6579974 |
tttaattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgtaatacgaat |
6580073 |
T |
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| Q |
118 |
gagaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtctggtatatttgatttgactctttctaaagtttctttattatttcc |
217 |
Q |
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| T |
6580074 |
gagaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtttggtatatttgatttgactctttctaaagttcctttattatttcc |
6580173 |
T |
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| Q |
218 |
ttcatcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccgaacac |
317 |
Q |
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| T |
6580174 |
ttcatcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccgaacac |
6580273 |
T |
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| Q |
318 |
tttatcaagaaggctgatgatgt |
340 |
Q |
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||| |||||||| |||||||||| |
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| T |
6580274 |
tttgtcaagaagactgatgatgt |
6580296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 34239670 - 34239579
Alignment:
| Q |
18 |
tttaattcgcggtaagggatacactgcttctccaccttgttgagaaaggatacgtgggatatcaattgattcaattgctgcataagaatgta |
109 |
Q |
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| T |
34239670 |
tttaattcgtggcaatggataaactgcttctccaccctgttgagaaaggatgcgagggatatcaattgattcgattgctgcatcagaatgta |
34239579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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