View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4787_low_2 (Length: 227)
Name: NF4787_low_2
Description: NF4787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4787_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33644325 - 33644572
Alignment:
| Q |
1 |
tcatcatatccaaatataagttgcatttctattgctggttgatgctgttatcctt---------------------ttccatttatcacaaaacttctca |
79 |
Q |
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| T |
33644325 |
tcatcatatccaaatataagttgcatttctattgctggttgatgctgttatccttttccatttatcacaaaaccttttccatttatcacaaaacttctca |
33644424 |
T |
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| Q |
80 |
gtttttctttataagtatttgatttgacgagccaaaaactaaatagtatttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatg |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644425 |
gtttttctttataagtatttgatttgacgagccaaaaactaaatagtatttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatg |
33644524 |
T |
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| Q |
180 |
gactactgccaccannnnnnngtgacataaataagcacactctagttc |
227 |
Q |
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| T |
33644525 |
gactactgccaccatttttttgtgacataaataagcacactctagttc |
33644572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 9614837 - 9614773
Alignment:
| Q |
129 |
ttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatggactactgccacca |
193 |
Q |
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| T |
9614837 |
ttttgtttaatgcttctcagccaagaattttgatggctatggcaagggatggactattgccacca |
9614773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 9639630 - 9639566
Alignment:
| Q |
129 |
ttttgttcaatgtttcacagccacgaattttgatggctatggcaagggatggactactgccacca |
193 |
Q |
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| T |
9639630 |
ttttgttgaatgactcacagccaagaattttgatggctatggcaagggatggacttctaccacca |
9639566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 9628651 - 9628604
Alignment:
| Q |
146 |
cagccacgaattttgatggctatggcaagggatggactactgccacca |
193 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||| |
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| T |
9628651 |
cagccaagacttttgatggcaatggcaagggatggactactgccacca |
9628604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 9648735 - 9648688
Alignment:
| Q |
146 |
cagccacgaattttgatggctatggcaagggatggactactgccacca |
193 |
Q |
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|||||| ||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
9648735 |
cagccaagaattttgatggctatggcaagggacggattgctgccacca |
9648688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 9654752 - 9654705
Alignment:
| Q |
146 |
cagccacgaattttgatggctatggcaagggatggactactgccacca |
193 |
Q |
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|||||| ||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
9654752 |
cagccaagaattttgatggctatggcaagggacggattgctgccacca |
9654705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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