View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788-Insertion-1 (Length: 951)
Name: NF4788-Insertion-1
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 92 - 804
Target Start/End: Complemental strand, 34426443 - 34425755
Alignment:
| Q |
92 |
gatattattattacttcatgttaactcttttgagataatcttaatgtggattaaaatgcagtagatagcaatatcaatactacattatctgaatgagcac |
191 |
Q |
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| T |
34426443 |
gatattattattacttcatgttaactcttttgagataatcttaatgtggattaaaatgcagtagatagcaatatcaatactacattatctgaatgagcac |
34426344 |
T |
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| Q |
192 |
ccaggtgacatatttcatactgtatttttggatcatgttaaaaggccaattgtgaaatagttgtcctaagggtacggcaccaagacataaacataataat |
291 |
Q |
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| T |
34426343 |
ccaggtgacatatttcatactgtatttttggatcatgttaaaaggtcaattgtgaaatagttgtcctaagggtacggcaccaagacataaacataataat |
34426244 |
T |
|
| Q |
292 |
tgtgtcctaaatttcattcttatacaaataatgatattgatgggttttaatatttgcattatcatgtgcaatgcccctttttcaaggcaagtaatatttg |
391 |
Q |
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| T |
34426243 |
tgtgtcctaaatttcattcttatacaaataataatattgatgggttttaatatttgcattatcatgtgcaatgccccttttttcaggtaagtaatatttg |
34426144 |
T |
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| Q |
392 |
ccactgctagtgctaccactcacatcacatattagcagtcaatatctctccctaagcatgcgacaattcaatattagaaatgtaattcagataagacaaa |
491 |
Q |
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| T |
34426143 |
ccactgctagtgctaccactcacatcacatattagcagtcaatatctctccctaagcatgcgacaattcaatattag-aatgtaattcagata------- |
34426052 |
T |
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| Q |
492 |
acataagggtgacaacttgccttgtcatgttctgtttattatggacaataataatgtannnnnnncttcttgtctctttttaacattagaactcgttcat |
591 |
Q |
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| T |
34426051 |
---------tgacaacttgccttgtcatgttctgtttattatggacaataataatgtatttttttcttcttgtctcttttgaacattagaactcgttcat |
34425961 |
T |
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| Q |
592 |
cattcattacctaactaaacaaatatctagatactagattttccttttcgaatatgcatgggttgacaaaaaggcttcctatgatttttaaggctatgac |
691 |
Q |
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| T |
34425960 |
cattcattacctaactaaacaaatatctagatactagattttccttttcgaatatgcatgggttgacaaaaaggcttactatgatttttaaggctatgac |
34425861 |
T |
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| Q |
692 |
aaaaaataacatagactagtttataattgatgagcttatagcgaataattcattgtttgggtaaaataaaattcgtggtcagacgagtttataaatatga |
791 |
Q |
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| T |
34425860 |
aaaaaataacatagac-agtttataattgatgagcttatagcaaataattcattgtttgg------taaaattcgtggtcagacgaacttataaatatga |
34425768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 34426573 - 34426481
Alignment:
| Q |
7 |
agatgcttccttttataactagtaaattatcatctcatgactcatgctctacttcatgtgaaactattctgaaaatcttctttttgatattat |
99 |
Q |
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| T |
34426573 |
agatgcttccttttataactagtaaattatcatctcatgactcatgctctacttcatgtgaaactattctgaaaatcttctttttgatattat |
34426481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 898 - 948
Target Start/End: Complemental strand, 34425664 - 34425613
Alignment:
| Q |
898 |
gttatacactagtaaaaataagttataaccttagagaa-aaaatgttactaa |
948 |
Q |
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| T |
34425664 |
gttatacaccagtaaaaataagttataaacttagagaaaaaaatgttactaa |
34425613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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