View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788-Insertion-2 (Length: 924)
Name: NF4788-Insertion-2
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 818; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 47 - 922
Target Start/End: Complemental strand, 15754171 - 15753297
Alignment:
| Q |
47 |
taagttctgaatacaatcacctcttttacatacagctctgacaccaactctcttgtttcctatatagatatctctaccatcaattgtaccaaaaattcct |
146 |
Q |
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| T |
15754171 |
taagttctgaatacaatcacctcttttacatatagctctgacaccaactctcttgtttcctatatagatatctctaccatcaatcgtaccaaaaattcct |
15754072 |
T |
|
| Q |
147 |
tcccctggaaaattttgaaaattctccacattttctgggactggtttgatagagtgcaaccttgcatagtccactagtgcacctgccactggatgacttg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15754071 |
tcccctggaaaattttgaaaattctccacattttctgggactggtttgatagagtgcaaccttgcataatccactagtgcacctgccactggatgacttg |
15753972 |
T |
|
| Q |
247 |
atttactctcaatacttgaaatcctaccaaagttttcattaaccaaatagctgatacataagctcttttatgataaccgtgtatgctataattgctcaat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15753971 |
atttactctcaatacttgaaatcctaccaaagttttcattaaccaaatagcttatacataagctcttttatgataaccgtgtatgctataattgctccat |
15753872 |
T |
|
| Q |
347 |
taatttgtttattcaagcagggctaaattacgaacattattacgttcgatagataaatgaaaacctaccagtacaataaggtctcattgttgatgtcatc |
446 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753871 |
taatttgtttattcaagcagggctaaactacgaacattattacgttcgatagataaatgaaaacctaccagtacaataaggtctcattgttgatgtcatc |
15753772 |
T |
|
| Q |
447 |
tccagcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtttcaagataatct |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753771 |
tccagcactaaaatctgttacagagaactctcctcttgttatggtgcctgttttatcaaaagccaccgtcttaattctagaaagtgtttcaagataatct |
15753672 |
T |
|
| Q |
547 |
ccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggcatccactcaata |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753671 |
ccacctttcaatagtaatccacttattgcagcttttgtgagagcacaaaagattgcaaccggtgtggagaggataagagcacaagggcatccactcaata |
15753572 |
T |
|
| Q |
647 |
aaaccacaagtgctagatgaaaccatggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaatcaacacaaccactgcgat |
746 |
Q |
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| T |
15753571 |
aaaccacaagtgctagatgaaaccatggctccatatcaggaacacttaatgcagctggaaccactgcaatgctagctgaaatcaacacaaccactgcgat |
15753472 |
T |
|
| Q |
747 |
acaacataaacataattcaaatattaatgttgtaatatgtgattattatacacattaatcggactcattatttggtgcttaatctatatgttcatatcag |
846 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15753471 |
acaacataaacataattcaaatattaatgttgtaatatgtgattattatacacattaaccggactcattatttggtgcttaatctatatgttcatatcag |
15753372 |
T |
|
| Q |
847 |
tgcatgaactctaaagtttaatcnnnnnnnataagaatgttttcttgttaggtatcaaatcatggtcctgatttcc |
922 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15753371 |
tgcatgaactctaaagtttaatc-ttttttataagaatgttttcttgttaggtatcaaatcatggtcctgacttcc |
15753297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 24193540 - 24193473
Alignment:
| Q |
291 |
aaatagctgatacataagctcttttatgataaccgtgtatgctataattgctcaattaatttgtttat |
358 |
Q |
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||||| || ||||||||| ||| |||||||| ||| |||||||||| ||||||||||| |||||||| |
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| T |
24193540 |
aaataacttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttat |
24193473 |
T |
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