View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788-Insertion-4 (Length: 642)
Name: NF4788-Insertion-4
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 479
Target Start/End: Complemental strand, 1153249 - 1152772
Alignment:
| Q |
7 |
aagaaaaactatgtaaccatgtcacatgtgtctcatgcactttgtttttaggcacatgtatatcttttagccggaattccaaccttagacttatttgatg |
106 |
Q |
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| T |
1153249 |
aagaaaaactatgtaaccatgtcacatgtgtctcatgcactttttttttaggcacatgtatatcttttagccggaattccaaccttagacttatttgatg |
1153150 |
T |
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| Q |
107 |
cgtcaaaaaataacttgattaaataatgatggtttaaaaccgtaaatggtaaacctaatagagaaattaaaatgcctataacttcatcataactatattt |
206 |
Q |
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| T |
1153149 |
cgtcaaaaaataacttgattaaataatgatggtttaaaaccgtaaatggtaaacctaatagagaaattaaaatgcctataacttcatcataactatattt |
1153050 |
T |
|
| Q |
207 |
tcttaaagaataccctatatccggttgtgtagctatagctatacacaccactaacgtgaaagttgttacggattaaa---acgcatcttaattagtttat |
303 |
Q |
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| T |
1153049 |
tcttaaagaataccctatatccggttgtgtagctatagctatacacaccactaacgtgaaagttgttacggattaaatgcatatatcttagttagtttat |
1152950 |
T |
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| Q |
304 |
tgagacgtaaacctaagaatgaagagttatatagtttaatgggtttgtcgttagtataaaagatgttgaagaaacgtaactcttagttgcttgtaaccgc |
403 |
Q |
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| T |
1152949 |
tgagacgtaaacctaagaatgaagagttatatagtttaatgggtttgtcgttagtataaaagatgttgaagaaacgtaactcttagttgcttgtaaccgc |
1152850 |
T |
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| Q |
404 |
aaaacggaggctttagggttattatta--aataaaaaacacgattacgttgttgctttgaaattcacacaatggaatc |
479 |
Q |
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| T |
1152849 |
aaaacggaggctttagggttattattaataaaaaaaaacacgattacgttgttgctttgaaattcacacaatggaatc |
1152772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 506 - 642
Target Start/End: Complemental strand, 1152743 - 1152606
Alignment:
| Q |
506 |
caaccttgtcacaatcaaaatcttcttatctatgtgacgtcaaatgcgccttgtcagaatctcactttccctccaatttcctaaccaaactttttcagtt |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
1152743 |
caaccttgtcacaatcaaaatcttcttatctatgtgacgtcaaatgcgccttgtcagaatctcactttccctccattttcctaacaaaactttttcagtt |
1152644 |
T |
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| Q |
606 |
tt-gagatcactatcacccttgctttattttaacttaa |
642 |
Q |
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|| | ||| |||||||||||||||||||||||||||| |
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| T |
1152643 |
ttccacatctctatcacccttgctttattttaacttaa |
1152606 |
T |
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