View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4788-Insertion-5 (Length: 446)

Name: NF4788-Insertion-5
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4788-Insertion-5
NF4788-Insertion-5
[»] chr7 (1 HSPs)
chr7 (8-408)||(4633211-4633611)
[»] chr8 (5 HSPs)
chr8 (8-337)||(15151726-15152046)
chr8 (23-201)||(19442610-19442787)
chr8 (23-201)||(19578761-19578938)
chr8 (100-197)||(19436988-19437085)
chr8 (100-197)||(19573137-19573234)
[»] chr2 (10 HSPs)
chr2 (15-203)||(37080975-37081161)
chr2 (30-97)||(17628120-17628187)
chr2 (30-97)||(17673190-17673257)
chr2 (23-97)||(24578877-24578950)
chr2 (302-375)||(24579120-24579193)
chr2 (25-122)||(1644863-1644960)
chr2 (78-142)||(3564446-3564510)
chr2 (302-375)||(1645421-1645494)
chr2 (36-72)||(3563806-3563842)
chr2 (376-408)||(1645515-1645547)
[»] chr1 (4 HSPs)
chr1 (34-195)||(27908568-27908729)
chr1 (25-197)||(2900659-2900830)
chr1 (302-375)||(28539015-28539088)
chr1 (35-97)||(28538760-28538822)
[»] chr4 (3 HSPs)
chr4 (41-377)||(6136226-6136550)
chr4 (25-142)||(2946913-2947030)
chr4 (298-347)||(2947142-2947191)
[»] chr6 (3 HSPs)
chr6 (37-197)||(20726108-20726268)
chr6 (41-122)||(27991418-27991496)
chr6 (298-375)||(20725943-20726021)
[»] chr3 (2 HSPs)
chr3 (25-201)||(9021474-9021650)
chr3 (302-375)||(9021306-9021379)
[»] chr5 (5 HSPs)
chr5 (25-269)||(21714571-21714802)
chr5 (25-269)||(21788486-21788717)
chr5 (302-376)||(15022695-15022769)
chr5 (25-68)||(13502250-13502293)
chr5 (302-376)||(15005195-15005269)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 4633611 - 4633211
Alignment:
Q  8 aaaatgtgtatgactattattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4633611 aaaatgtgtatgactattattgaataataaataaattgtttggtaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccaca 4633512  T
Q  108 cttatgtttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4633511 cttatgtttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaa 4633412  T
Q  208 acacagaggatgagagttagaaagaatatagactcataaattaggtaaactattgtgactttagagtgttaatatgaaaaggcnnnnnnntctaactctt 307  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||       ||||||||||    
T  4633411 acacagaggatgagagttagaaagaatatagactcataaactagataaattattgtgactttagagtgttaatatgaaaaggcaaaaaaatctaactctt 4633312  T
Q  308 tattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgcttttagttgctaaaattatgaatgtaattaatattt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4633311 tattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgcttttagttgctaaaattatgaatgtaattaatattt 4633212  T
Q  408 t 408  Q
    |    
T  4633211 t 4633211  T

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Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 15151726 - 15152046
Alignment:
Q  8 aaaatgtgtatgactattattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccaca 107  Q
    ||||| |||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||  || ||||||||||||||| ||||  |||| |||    
T  15151726 aaaatttgtatgactatta---aataataaataaattgtttgacaattgcaattggcacctactccaatcttatgaagttatgatgaatggtatacgaca 15151822  T
Q  108 cttatgtttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaa 207  Q
    |||||| |||||||| ||  ||| ||||||||||| ||| | | ||||| |  ||||| ||  |||||||||| |||||||||||||||||||| |        
T  15151823 cttatgcttttggcaattggttgctcttgtgttaatagttgcagaattgtgatggagagatgatttttgtttacaaattgagatggagagattaga---- 15151918  T
Q  208 acacagaggatgagagttagaaagaatatagactcataaattaggtaaactattgtgactttagagtgttaatatgaaaaggcnnnnnnntctaactctt 307  Q
     || |||| |||||| ||| ||||||   ||||||||||| |||||||| |||||||||||| ||||||||||||| ||| ||       ||| ||||||    
T  15151919 -caaagagaatgagaattataaagaaacgagactcataaactaggtaaaatattgtgacttttgagtgttaatatgcaaaagc-aaaaaatctgactctt 15152016  T
Q  308 tattattgataacattccatatcattattt 337  Q
    ||||||| |||||||||| |||||||||||    
T  15152017 tattattcataacattccctatcattattt 15152046  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 19442610 - 19442787
Alignment:
Q  23 attattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggca 122  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||  |||   |||||||| | ||||||    
T  19442610 attattaaataataaataaattgtttggaaattgcaattggcacctactcctatattatg-agttatgatcaatggtataaggcacttatgctcttggca 19442708  T
Q  123 tttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagatta 201  Q
     ||  | ||||||||||||| ||| | | |||||||  ||||| || ||||||||||| || |||||||||| ||||||    
T  19442709 attgatcgttcttgtgttaatagttgcataattgagatggagagatgttttttgtttacaatttgagatggatagatta 19442787  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 19578761 - 19578938
Alignment:
Q  23 attattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggca 122  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||  |||   |||||||| | ||||||    
T  19578761 attattaaataataaataaattgtttggaaattgcaattggcacctactcctatattatg-agttatgatcaatggtataaggcacttatgctcttggca 19578859  T
Q  123 tttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagatta 201  Q
     ||  | ||||||||||||| ||| | | |||||||  ||||| || ||||||||||| || |||||||||| ||||||    
T  19578860 attgatcgttcttgtgttaatagttgcataattgagatggagagatgttttttgtttacaatttgagatggatagatta 19578938  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 19436988 - 19437085
Alignment:
Q  100 ataccacacttatgtttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagag 197  Q
    |||| ||||||||| || || || || |||||||||||||||| ||| | | |||||||  ||||| || |||||| |||| |||||||||| |||||    
T  19436988 atacgacacttatgcttatgacaattgtttgttcttgtgttaatagttgcataattgagatggagagatgttttttctttacaaattgagatagagag 19437085  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 19573137 - 19573234
Alignment:
Q  100 ataccacacttatgtttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagag 197  Q
    |||| ||||||||| || || || || |||||||||||||||| ||| | | |||||||  ||||| || |||||| |||| |||||||||| |||||    
T  19573137 atacgacacttatgcttatgacaattgtttgttcttgtgttaatagttgcataattgagatggagagatgttttttctttacaaattgagatagagag 19573234  T

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Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 37081161 - 37080975
Alignment:
Q  15 gtatgactattattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgt 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||||||| || |  ||||||||     
T  37081161 gtatgactattattgaataataaataaattgtttgccaattgcaattggcacctagtcatatttaatgaagttgtgatcaatgatatgcggcacttatgc 37081062  T
Q  115 ttttggcatttatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaa 203  Q
    |||| ||| || |||||||   |||||||||| | | ||||| |  |||||||||||||||||||| ||||||||||||||||||||||    
T  37081061 ttttagcaattgtttgttc--atgttaacagttgcataattgtgatggagaaatattttttgtttacaaattgagatggagagattaaa 37080975  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 17628187 - 17628120
Alignment:
Q  30 aataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatg 97  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  17628187 aatagtaaataaattgtttggcaattgcaattggcacatactcctatcttatgaagttatgatcaatg 17628120  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 17673257 - 17673190
Alignment:
Q  30 aataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatg 97  Q
    |||| ||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  17673257 aatagtaaataaattgtttgccaattgcaattggcacatactcctatcttatgaagttatgatcaatg 17673190  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 24578877 - 24578950
Alignment:
Q  23 attattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatg 97  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||| ||| ||||| ||||||||||||||    
T  24578877 attattaaataataaataaattgtttggcaattgcaacgggcacctactcctatcttatg-agttatgatcaatg 24578950  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 24579120 - 24579193
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttt 375  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||| ||  ||||||||||||||    
T  24579120 actctttattattcataacattcaatatcattattttaattttagtgcctcaattagataattcatttgctttt 24579193  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 1644863 - 1644960
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggca 122  Q
    |||| |||||||||||||||||||| |||||||||||| ||| ||||| ||| |||||||| ||| |||||||  |||| |||| |||| | ||||||    
T  1644863 tattaaataataaataaattgtttgacaattgcaattgacacatactcctatcttatgaagatataatcaatggtatacgacacctatgctcttggca 1644960  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 3564446 - 3564510
Alignment:
Q  78 ttatgaagttatgatcaatgacataccacacttatgtttttggcatttatttgttcttgtgttaa 142  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||  |||||||||||||||    
T  3564446 ttatgaagttatgatcaatggtatacaacacttatgtttttggcaattgattgttcttgtgttaa 3564510  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 1645421 - 1645494
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttt 375  Q
    ||||||||||||| |||||| ||| ||||||||||| ||||||||| |||||||| ||  ||||| ||||||||    
T  1645421 actctttattattcataacactccttatcattatttcaattttagtacctcaattagataattcacttgctttt 1645494  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 3563806 - 3563842
Alignment:
Q  36 aaataaattgtttggcaattgcaattggcacctactc 72  Q
    |||||||||||||||||||||||||||||||||||||    
T  3563806 aaataaattgtttggcaattgcaattggcacctactc 3563842  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 1645515 - 1645547
Alignment:
Q  376 agttgctaaaattatgaatgtaattaatatttt 408  Q
    |||||||||||||||||||||||||||||||||    
T  1645515 agttgctaaaattatgaatgtaattaatatttt 1645547  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 27908568 - 27908729
Alignment:
Q  34 ataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatttatttgttc 133  Q
    |||||||| || ||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||  |||| ||||||||| |||||||| ||| ||||||    
T  27908568 ataaataatttttttggcaattgcagttggcacatacttctattttatgaagttatggtcaatggtatacgacacttatgcttttggcaattaattgttc 27908667  T
Q  134 ttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggag 195  Q
    ||||||||| ||| | | |||||||  ||||| |||||||||||||| ||||||||||||||    
T  27908668 ttgtgttaatagttgcataattgagatggagagatattttttgtttacaaattgagatggag 27908729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 2900659 - 2900830
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatt 124  Q
    |||| ||||||||||||||||||||||| ||||| ||| ||| ||||| ||| ||||||||||||||||||||  |||| ||| ||||| |||||| | |    
T  2900659 tattaaataataaataaattgtttggca-ttgcagttgacacgtactcttatcttatgaagttatgatcaatggtatacgacatttatgcttttggaaat 2900757  T
Q  125 tatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagag 197  Q
    |  ||||||| ||||||| ||| | | |||||||  | ||| || ||||||||||| |||||||| |||||||    
T  2900758 tgattgttctcgtgttaatagttgcataattgagatgaagagatgttttttgtttacaaattgagttggagag 2900830  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 28539015 - 28539088
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttt 375  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||    
T  28539015 actctttattattcataacattccatatcattattttaattttagtgcctcaatttgattattcacttgctttt 28539088  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 28538760 - 28538822
Alignment:
Q  35 taaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatg 97  Q
    ||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  28538760 taaatgaattgtttggcaattgcaattagcaccttctcctattttatgaagttatgatcaatg 28538822  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 377
Target Start/End: Original strand, 6136226 - 6136550
Alignment:
Q  41 aattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatttatttgttcttgtgtt 140  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  |||||| || |||||||| ||  || |  |||||||    
T  6136226 aattgtttggcaattgcaattggcacctactcatatcttatgaagttatgatcaatgatatatgacacttgtgcttttggcaattgattttatttgtgtt 6136325  T
Q  141 aacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaaacacagaggatgagagttagaaagaatatagac 240  Q
    || ||| | | |||||||  | ||| ||  |||||||||| ||||||||||||||     ||||||  || |||| || ||| ||||||||||   ||||    
T  6136326 aatagttgcataattgagatgaagagatggtttttgtttacaaattgagatggag-----aaattattcatagagaataagaattagaaagaaaggagac 6136420  T
Q  241 tcataaa-ttaggtaaactattgtgactttagagtgttaatatgaaaaggcnnnnnnntctaactctttattattgataacattccatatcattatttaa 339  Q
    ||||||| | ||||||| |||||| ||||       |||||||| ||| ||       | | ||| ||||||||| |||||| ||||||||||||||| |    
T  6136421 tcataaactaaggtaaaatattgtaactt-------ttaatatgcaaaagc-aaaatatatgactatttattattcataacactccatatcattatttta 6136512  T
Q  340 attttagttcctcaatttgactattcatttgcttttag 377  Q
    |||||||| |||||||| || |||||| ||| ||||||    
T  6136513 attttagtgcctcaattagattattcacttgtttttag 6136550  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 2946913 - 2947030
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatt 124  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||  ||| || |||||||||||||||||  |||  ||||||||| |||||||| |    
T  2946913 tattaaataataaataaattgtttggcaattgcaattgacacctacttctatcttgtgaagttatgatcaatggtatatgacacttatgcttttggcaat 2947012  T
Q  125 tatttgttcttgtgttaa 142  Q
    |  |||||||||||||||    
T  2947013 tgattgttcttgtgttaa 2947030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 2947142 - 2947191
Alignment:
Q  298 tctaactctttattattgataacattccatatcattatttaaattttagt 347  Q
    ||||||| ||||||||| |||||| || |||||||||||| |||||||||    
T  2947142 tctaactttttattattcataacactcaatatcattattttaattttagt 2947191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 20726268 - 20726108
Alignment:
Q  37 aataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatttatttgttcttg 136  Q
    |||||||| ||||| ||||||||||||||| || || ||| ||||||||||||||||||||  |||| ||||||||| ||||| || ||  |||||||||    
T  20726268 aataaattatttggtaattgcaattggcacatattcctatcttatgaagttatgatcaatgttatacgacacttatgcttttgacaattgattgttcttg 20726169  T
Q  137 tgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagag 197  Q
    |||||| |||   | |||||||  ||||| || ||||||||||| |||||||||| |||||    
T  20726168 tgttaatagtttcataattgagatggagatatgttttttgtttacaaattgagatagagag 20726108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 27991496 - 27991418
Alignment:
Q  41 aattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggca 122  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |  || ||||||||| ||||||||    
T  27991496 aattgtttggcaattgcaattggcacctactcatatcttatg-agttatgatcaatggc--acgacacttatgcttttggca 27991418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 20726021 - 20725943
Alignment:
Q  298 tctaactctttattattgat-aacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttt 375  Q
    |||||||||||||||||  | |||| ||||||||||||||| ||||||| | |||||||| || |||||||||||||||    
T  20726021 tctaactctttattattctttaacactccatatcattattttaattttattgcctcaattagattattcatttgctttt 20725943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 9021650 - 9021474
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatt 124  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||  |||||||   ||||  |||||||| ||||| || |    
T  9021650 tattaaataataaataaattgtttggcaattgcaattggcgcctactcctatcttatgaagttgcgatcaatcgtatacatcacttatgcttttgacaat 9021551  T
Q  125 tatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagatta 201  Q
    |  ||||||||||| ||| ||| |   |||| ||  ||||| |||||||||||||  ||||||||||||||| ||||    
T  9021550 tgattgttcttgtgctaatagttgcgtaattaagatggagagatattttttgttttcaaattgagatggagatatta 9021474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 9021379 - 9021306
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttt 375  Q
    ||||||||||| | |||||| || |||||||||||| |||| |||| |||||||| || |||||| ||||||||    
T  9021379 actctttattactcataacactctatatcattattttaattgtagtgcctcaattagattattcacttgctttt 9021306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 21714571 - 21714802
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatt 124  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||       || ||||||||| |||||  | |    
T  21714571 tattaaataataaataaattctttggcaattgcaattggcacctacttctatcttatgaagttatgatca-------actacacttatgcttttgaaaat 21714663  T
Q  125 tatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaaacacagaggatgagagt 224  Q
    |  |||||||| |||||| ||| | | || |||| | |||| |||||||||||| | |||||||||||||| |      |||  || |||| || ||| |    
T  21714664 tgattgttcttttgttaatagttgcataactgagacagagagatattttttgttaacaaattgagatggagtg-----gttagtcatagagaataagaat 21714758  T
Q  225 tagaaagaatatagactcataaattaggtaaactattgtgacttt 269  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||    
T  21714759 tagaaagaa-atagactcataaattaggtaaaatattgcgacttt 21714802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 21788486 - 21788717
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacctactcatattttatgaagttatgatcaatgacataccacacttatgtttttggcatt 124  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||       || ||||||||| |||||  | |    
T  21788486 tattaaataataaataaattctttggcaattgcaattggcacctacttctatcttatgaagttatgatca-------actacacttatgcttttgaaaat 21788578  T
Q  125 tatttgttcttgtgttaacagtaggaaaattgaggcggagaaatattttttgtttaaaaattgagatggagagattaaattaaacacagaggatgagagt 224  Q
    |  |||||||| |||||| ||| | | || |||| | |||| |||||||||||| | |||||||||||||| |      |||  || |||| || ||| |    
T  21788579 tgattgttcttttgttaatagttgcataactgagacagagagatattttttgttaacaaattgagatggagtg-----gttagtcatagagaataagaat 21788673  T
Q  225 tagaaagaatatagactcataaattaggtaaactattgtgacttt 269  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||    
T  21788674 tagaaagaa-atagactcataaattaggtaaaatattgcgacttt 21788717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 15022769 - 15022695
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttta 376  Q
    |||||||||||||  ||||| ||||||||||||||| |||||||||  ||||||| || |||||| |||||||||    
T  15022769 actctttattattcttaacactccatatcattattttaattttagtgtctcaattagattattcacttgctttta 15022695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 13502293 - 13502250
Alignment:
Q  25 tattgaataataaataaattgtttggcaattgcaattggcacct 68  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  13502293 tattaaataataaataaattctttggcaattgcaattggcacct 13502250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 15005269 - 15005195
Alignment:
Q  302 actctttattattgataacattccatatcattatttaaattttagttcctcaatttgactattcatttgctttta 376  Q
    |||||||||||||  ||||||| ||||||||||||| ||||||||   ||||||| || |||||| ||| |||||    
T  15005269 actctttattattcttaacatttcatatcattattttaattttagcgtctcaattagattattcacttgatttta 15005195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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