View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788_high_1 (Length: 528)
Name: NF4788_high_1
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 35445538 - 35445028
Alignment:
| Q |
1 |
aagaaagggggcttgttcctaatacggttacttttgttgctgttctatctgcatgtgctcatgcagggctaatacatgaagggagacaagtttttgcaag |
100 |
Q |
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| T |
35445538 |
aagaaagggggcttgttcctaatacggttacttttgttgctgttctatctgcatgtgctcatgcagggctaatacatgaagggagacaagtttttgcaag |
35445439 |
T |
|
| Q |
101 |
catgagagaagagtatggtttggttcctggactggagcatcatgtttgtatggttgatatgcttgggaaggccgggttgctaactgaagcatatcaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35445438 |
catgagagaagagtatggtttggttcctggactggagcatcatgtttgtatggttgatatgcttgggaaggctgggttgctaactgaagcatatcaattc |
35445339 |
T |
|
| Q |
201 |
atcaaggaactttgtcctgtggagcatgttccggcagtgtggactgcaatgcttggtgcttgcaagatgcataagaattatgatcttggggtggaagctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445338 |
atcaaggaactttgtcctgtggagcatgttccggcagtgtggactgcaatgcttggtgcttgcaagatgcataagaattatgatcttggggtggaagctg |
35445239 |
T |
|
| Q |
301 |
ctcaacatctcatttctttagagccagagaatcctagcaattacgtattgctttctaatatgtatgcattggctgggagaatggatagagtggaatctgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445238 |
ctcaacatctcatttctttagagccagagaatcctagcaattacgtattgctttctaatatgtatgcattggctgggagaatggatagagtggaatctgt |
35445139 |
T |
|
| Q |
401 |
tagaaatgtaatgatccaaagaggtattaaaaagcaagcgggttatagctctattgatgtcaacaataaaacttatctttttagaatgggtgataaggct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35445138 |
tagaaatgtaatgatccaaagaggtattaaaaagcaagcgggttatagctctattgatgtcaacaataaaacttatctttttagaatgggtgataaggct |
35445039 |
T |
|
| Q |
501 |
catcctgagac |
511 |
Q |
| |
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| T |
35445038 |
catcctgagac |
35445028 |
T |
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