View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788_high_3 (Length: 370)
Name: NF4788_high_3
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 25189001 - 25188741
Alignment:
| Q |
22 |
atagcatacccgatcaaaaggctgccaagagatcacttgatttccaatttggatggtaattacaaaatccattatctagtacaagaaagtcatatatcca |
121 |
Q |
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| T |
25189001 |
atagcatacccgatcaaaaggctgccaagagatcacttgatttccaatttggatggtaattacaaaatccattatctagtacaagaaagtcatatatcca |
25188902 |
T |
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| Q |
122 |
tcttatttgaaagctattcccccaccaatatttcaaatacaccgattccattcaaatacactatttcggacagagaaaatcatannnnnnngtccattcg |
221 |
Q |
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| T |
25188901 |
tcttatttgaaagctactcccccaccaatatttcaaatacaccgattccattcaaatacactatttcggacagagaaaatcatatttttttgtccattcg |
25188802 |
T |
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| Q |
222 |
aaatggcgcatttggatgaaaccggagttttagaaattgttggaggataacaacactttgg |
282 |
Q |
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| T |
25188801 |
aaatggtgtatttggatgaacccggagttttagaaattgttggaggataacaacactttgg |
25188741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 25188726 - 25188682
Alignment:
| Q |
298 |
caagtgacctagtgactaaaatttattttataagaagaataagta |
342 |
Q |
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| T |
25188726 |
caagtgacttggtggctaaaatttattttataagaagaataagta |
25188682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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