View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4788_high_7 (Length: 235)

Name: NF4788_high_7
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4788_high_7
NF4788_high_7
[»] chr4 (2 HSPs)
chr4 (1-218)||(25909780-25909994)
chr4 (2-50)||(23424292-23424340)
[»] chr8 (1 HSPs)
chr8 (1-50)||(18887332-18887381)
[»] chr7 (1 HSPs)
chr7 (1-50)||(2998493-2998542)
[»] chr3 (1 HSPs)
chr3 (1-50)||(35258809-35258858)
[»] chr6 (1 HSPs)
chr6 (2-50)||(13502762-13502810)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25909780 - 25909994
Alignment:
Q  1 tagtttgttattatttaaaagtcataaacatgtatatttataattttaattttcacatttcaatagtaattggagttattagtactactgctaaagatat 100  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  25909780 tagtttgttattatttaaaagtcataaacatctatatgtataattttaattttcaaatttcaattgtaattggagttattagtactactgctaaagatat 25909879  T
Q  101 agccatgcatcatatgtataagtcctaacattagaggcagaagaaccaaacaattgcactacaaacatctatctagggattgaacaatttcgaattcatg 200  Q
    |||||| |||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25909880 agccatacatcatatgtataagtcctaacattagaggc---agaaccaaacaattgcagtacaaacatctatctaaggattgaacaatttcgaattcatg 25909976  T
Q  201 aaacggtgatttacaaat 218  Q
    ||||||||||||||||||    
T  25909977 aaacggtgatttacaaat 25909994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 23424340 - 23424292
Alignment:
Q  2 agtttgttattatttaaaagtcataaacatgtatatttataattttaat 50  Q
    |||||||||  |||||||||||||||| |  ||||||||||||||||||    
T  23424340 agtttgttacaatttaaaagtcataaatacctatatttataattttaat 23424292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18887381 - 18887332
Alignment:
Q  1 tagtttgttattatttaaaagtcataaacatgtatatttataattttaat 50  Q
    |||||||||| ||||||||||||| |||||| ||||  ||||||||||||    
T  18887381 tagtttgttactatttaaaagtcacaaacatctatacatataattttaat 18887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2998493 - 2998542
Alignment:
Q  1 tagtttgttattatttaaaagtcataaacatgtatatttataattttaat 50  Q
    |||||||||| ||||||||||||| |||||| ||||  ||||||||||||    
T  2998493 tagtttgttactatttaaaagtcacaaacatatatacatataattttaat 2998542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35258858 - 35258809
Alignment:
Q  1 tagtttgttattatttaaaagtcataaacatgtatatttataattttaat 50  Q
    |||||||||| ||||||||||||| |||||| ||||  ||||||||||||    
T  35258858 tagtttgttactatttaaaagtcacaaacatctatacatataattttaat 35258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 13502810 - 13502762
Alignment:
Q  2 agtttgttattatttaaaagtcataaacatgtatatttataattttaat 50  Q
    ||||||||| | ||||||||||| |||||||||||  ||||||||||||    
T  13502810 agtttgttactgtttaaaagtcacaaacatgtatacatataattttaat 13502762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University