View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788_low_4 (Length: 323)
Name: NF4788_low_4
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 8821985 - 8822297
Alignment:
| Q |
11 |
cacagagcgcaataatacccacacaaggggcaatttcgtcactcacctcatatatataaacccatgcaaaccccaacaaaatcacttaacccaatccaat |
110 |
Q |
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| T |
8821985 |
cacagagcgcaataatacccacacaaggggcaatttcgtcactcacctcatatatataaacccatgcaaaccccaacaaaatcacttaacccaatccaat |
8822084 |
T |
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| Q |
111 |
ggcttcttcattcacgttctccgtcgtaaccgtttttctcgccaccgtcattctcaccgtacacggttgttctccttcagacagaaccgcactcttatcc |
210 |
Q |
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| T |
8822085 |
ggcttcttcattcacgttctccgtcgtaaccgtttttctcgccaccgtcattctcaccgtacacggttgttctccgtcagacagaaccgcactcttatcc |
8822184 |
T |
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| Q |
211 |
ttcaaagcatccctcaaagaaccctaccacggcatcttcaatacatggtccggcgaaaacttctgcgtaaactggtacggcgttagttgcgactccacca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8822185 |
ttcaaagcatccctcaaagaaccctaccacggcatcttcaatacatggtccggcgaaaactgctgcgtaaactggtacggcgttagttgcgactccacca |
8822284 |
T |
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| Q |
311 |
ccggccgtgtcac |
323 |
Q |
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| T |
8822285 |
ccggccgtgtcac |
8822297 |
T |
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