View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788_low_5 (Length: 306)
Name: NF4788_low_5
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 31403635 - 31403911
Alignment:
| Q |
16 |
tcatttccattatattttcttttaaatggtttggcttcataggaacttttaatatcttcacatgttaaatacggtgtgaaattttagtattggaatgatt |
115 |
Q |
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| T |
31403635 |
tcatttccattattattttttttgaatggtttggcttcataggaacttttaatatcttcacatgttaaatacggtgtgaaattttagtattggaatgat- |
31403733 |
T |
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| Q |
116 |
agccaagttgactgaataagctggaaagtgggtatcaagtaactatgatatgctccagtcataaaatgaatttggttcttgatattgtctagaatgaacc |
215 |
Q |
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| T |
31403734 |
agccaagttgactgaataagctggaaagtgggtatcaagtaactatgatatgctccagtcataaaatgaatttggttcttgatattgtctagaatgaaac |
31403833 |
T |
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| Q |
216 |
ttgaaatattgtcttcagaaatgtggaattttgtagataccaatgattatagttgattggttctgactcctgattcct |
293 |
Q |
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| T |
31403834 |
ttgaaatattgtcttcagcaatgtggaattttgtagataccaatgattatagttgattggttctgactcctgattcct |
31403911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 31336946 - 31336858
Alignment:
| Q |
29 |
attttcttttaaatggtttggcttcataggaacttttaatatcttcacatgttaaatacggtgtgaaattttagtattggaatgattagc |
118 |
Q |
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| T |
31336946 |
attttattttaaatggtttagcgacataggaa-ttttaatatcttcacgtgataaataccatgtaaaattttagaactggaatgattagc |
31336858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 31336785 - 31336681
Alignment:
| Q |
178 |
aaaatgaatttggttcttga-tattgtctagaatgaaccttgaaatattgtcttcagaaatgtggaattttgtagataccaatgattatagttgattggt |
276 |
Q |
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|||||||||||||||||||| | | ||||||| |||| |||||| | ||||||||||||||||| ||||| ||| |||| | ||||||||||| |||| |
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| T |
31336785 |
aaaatgaatttggttcttgactgtcgtctagactgaaatttgaaagactgtcttcagaaatgtggtattttataggaaccagtaattatagttgactggt |
31336686 |
T |
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| Q |
277 |
tctga |
281 |
Q |
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|||| |
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| T |
31336685 |
cctga |
31336681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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