View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4788_low_9 (Length: 209)
Name: NF4788_low_9
Description: NF4788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4788_low_9 |
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| [»] scaffold0478 (1 HSPs) |
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Alignment Details
Target: scaffold0478 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: scaffold0478
Description:
Target: scaffold0478; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 11739 - 11916
Alignment:
| Q |
14 |
tatcaaaggtgtgccgagtccggatgctatttccaatagagtctggttacgccaatactcctgaggcaagtgtaagaaacgaacccatatttgggcatga |
113 |
Q |
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| T |
11739 |
tatcaaaggtgtgccgagtccggatgttatttccaatagagtctgcttacgccaatacttctgaggcaagtgtaagaaacgaacccatatttgggcatga |
11838 |
T |
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| Q |
114 |
gtttgagcctgtgtctgtattgaaaaatcactagaccaacgatagaatcgcatcagaccagggttcaattgcacaacc |
191 |
Q |
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| T |
11839 |
gtttgagcctgtctctatattgaaaaatcactagaccaacgatagaatcgcatcagaccaaggttcaattgcacaacc |
11916 |
T |
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Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 26153763 - 26153586
Alignment:
| Q |
14 |
tatcaaaggtgtgccgagtccggatgctatttccaatagagtctggttacgccaatactcctgaggcaagtgtaagaaacgaacccatatttgggcatga |
113 |
Q |
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| T |
26153763 |
tatcaaaggtgtgccgagtccggatgctatttccaataaagtctgcttacgccaatactcatggggcaagtgtaagaaacagacccatatttgggcgtgt |
26153664 |
T |
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| Q |
114 |
gtttgagcctgtgtctgtattgaaaaatcactagaccaacgatagaatcgcatcagaccagggttcaattgcacaacc |
191 |
Q |
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| T |
26153663 |
gtttgagcctgtgcctgtgtagaaaaatcactagaccaacaatagaatagcatcaaaccggggttcaagttcacaacc |
26153586 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 21592078 - 21592140
Alignment:
| Q |
61 |
tacgccaatactcctgaggcaagtgtaagaaacgaacccatatttgggcatgagtttgagcct |
123 |
Q |
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| T |
21592078 |
tacgccaatactcttgaggcaagtgtaagaatcgaacccatatctgagcgtgagtttgagcct |
21592140 |
T |
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