View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-1 (Length: 900)
Name: NF4789-Insertion-1
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 316 - 900
Target Start/End: Original strand, 27675883 - 27676469
Alignment:
| Q |
316 |
cctgtatttgacataatcttaacataacttgtgctctttgatgtattttaatttactaaaagcttctttttccctcttnnnnnnncatttctcttatata |
415 |
Q |
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| T |
27675883 |
cctgtatttgacataatcttaacataacttgtgctatttgatgtattttaatttactaaaagcttctttttccctcttaaaaaaacatttctcttatata |
27675982 |
T |
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| Q |
416 |
aattcctttgacatttgtatacaaggatcgagaagagaagcccatgagtttctgttgcagcaataaatccgatcgcaacgagtcataacaagaaaggcat |
515 |
Q |
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| T |
27675983 |
aattcctttgacatttgtatacaaggatcgagaagagaagcccatgagtttctgttgcagcaataaatccgatcgcaacgagtcataacaagaaaggcat |
27676082 |
T |
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| Q |
516 |
gcttgtaagatgtgataagcgtgaaaactaagaactgaaaaagtgtatnnnnnnnnggatgtgagaagcatgttatggtttcttgttccaagttcattca |
615 |
Q |
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| T |
27676083 |
gcttgtaagatgtgataagcgtgaaaactaagaactgaaaaagtgtataaaaaaaaggatgtgagaagcatgttatggtttcttgttccaagttcattca |
27676182 |
T |
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| Q |
616 |
tagtttctgcttatatgtatctagctatatctaccagtctagtaatgaaagatctgtgccaatgccaagcatgttgtagattttatttgcgcatgcactt |
715 |
Q |
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| T |
27676183 |
tagtttctgcttatatgtatcta--tatatctaccagtctagtaatgaaagatctgtgccaatgccaagcatgttgtagattttatttgcgcatgcactt |
27676280 |
T |
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| Q |
716 |
gtgcacgctttggctcgtgcatccacaaaaccaaaatcaccttaatattattaatttaatattttagtcaaactcaaactat--ttaatgcacttgtgtt |
813 |
Q |
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| T |
27676281 |
gtgcacgctttggctcgtgcatccacaaaaccaaaatcaccttaatattattaatttaatattttagtcaaactcaaactatagttaatgcacttgtgtt |
27676380 |
T |
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| Q |
814 |
gttgnnnnnnncatgcaaaacgc-acgtaaacgtgccgcgcgaaatgtttctgtcgttttgttccgt-actgaccatggtgcgcgtgtg |
900 |
Q |
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| T |
27676381 |
gttgtttttttcatgcaaaacgcaacgtaaacgtgccacgcgaaatgtttctgtcgttttgttcggtaactgaccatggtgcgcgtgtg |
27676469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 27675295 - 27675380
Alignment:
| Q |
8 |
catatgaacttagatgttatactatattgtaagcttgaaagtttatcttcctatatagagct-aaatcattgtgtaaataatagag |
92 |
Q |
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| T |
27675295 |
catatgaacttagatgttatactatattgtaagcttgaaagtttatcttcctatatagagctaaaatcattgtgtaaataatagag |
27675380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 27675410 - 27675501
Alignment:
| Q |
110 |
aacttttaaagagttgactatacaaaaaacactctcttgtatgctataaccattttattttatgtgagacatatttataaagtgtaaatcga |
201 |
Q |
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| T |
27675410 |
aacttttaaagagttgactatacaaaaaacactctcttgtacactataatcattttattttatgtgagacatgtttataaagcgtaaatcga |
27675501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 27675502 - 27675541
Alignment:
| Q |
221 |
ataataagtggatcttaaaataagtgttgtaaagtgaata |
260 |
Q |
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| T |
27675502 |
ataatgagtggatcttaaaataagtgttgtatagtgaata |
27675541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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