View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-11 (Length: 340)
Name: NF4789-Insertion-11
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 41659804 - 41659478
Alignment:
| Q |
8 |
catggacaccccacatccctgacatcgacatatctttcttcaacaagtagtattatcgagcagggccacagctacaagagtagaactaaatttatagacg |
107 |
Q |
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| T |
41659804 |
catggacaccccacatccct-acattaacatatctttcttcaacaagta---ttatcgagcagggccacagctacaagagtagaagtaaatttatagacg |
41659709 |
T |
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| Q |
108 |
aaagtggagaaaggttaccaacttttctgtattagctaatagcttagctataagaagtaagaacatagaggacatgacaattgaaccaatcatgttatgt |
207 |
Q |
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| T |
41659708 |
aaagtggagaaaggttaccaacttttctgtattagctaatagcttagctataagaagtaagaacatagaggacataacaattgaaccaatcatgttatgt |
41659609 |
T |
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| Q |
208 |
taatcagactttgatttcgtgatttattataagttataatcaattagtattattaaatataactatataggggctgatatgtatggtacaacaaccactc |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
41659608 |
taatcaaactttgatttcgtgatttattataagttataatcaattagtattagt-aatataactata-gggggctgatatatatggtacaacaaccactc |
41659511 |
T |
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| Q |
308 |
gatttacatgttggaatggtttaaaaccgattt |
340 |
Q |
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| T |
41659510 |
gatttacatgttggaatggtttaacaccgattt |
41659478 |
T |
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