View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4789-Insertion-12 (Length: 316)
Name: NF4789-Insertion-12
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4789-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 13400164 - 13400473
Alignment:
| Q |
8 |
ctagcagcaacagttccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatct |
107 |
Q |
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| T |
13400164 |
ctagcagcaacaattccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatat |
13400263 |
T |
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| Q |
108 |
aagttgttaaaactc-aagttgttaacaggagcaacgcgtgaggaattttttaattctcaattcttgatttgaaggaccaaaataacagttcacactaat |
206 |
Q |
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| T |
13400264 |
aagttgttataactctaagttgttaataggagcaacgcgtgaggaattttttaattctcaattcttgatttgaaggaccaaaataacagttcacactaat |
13400363 |
T |
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| Q |
207 |
ttctgcaaagttaaacatttctgcataaaaatgtcattgattaatctaaaagtattagcgttaatttgtaacgaaaatttgaaattgataagcagagtat |
306 |
Q |
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| T |
13400364 |
ttctgcaaagttaaacatttctgcataaaaatgtcattgataaatctaaaagtattagcgttaatttgtaacgaaaatttgaaattgataagcagagtat |
13400463 |
T |
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| Q |
307 |
ttacagcata |
316 |
Q |
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| T |
13400464 |
ttacagcata |
13400473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 4027308 - 4027418
Alignment:
| Q |
13 |
agcaacagttccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatctaagtt |
112 |
Q |
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| T |
4027308 |
agcaacaattccatatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaagtt |
4027407 |
T |
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| Q |
113 |
gttaaaactca |
123 |
Q |
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| T |
4027408 |
gttaaaactca |
4027418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 4013009 - 4013119
Alignment:
| Q |
13 |
agcaacagttccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatctaagtt |
112 |
Q |
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| T |
4013009 |
agcaacaattccatattgcaatgccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaagtc |
4013108 |
T |
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| Q |
113 |
gttaaaactca |
123 |
Q |
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| T |
4013109 |
attaaaactca |
4013119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 3951552 - 3951458
Alignment:
| Q |
29 |
ggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatctaagttgttaaaactca |
123 |
Q |
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| T |
3951552 |
ggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaactctaagttgttaaaactca |
3951458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 4004603 - 4004705
Alignment:
| Q |
21 |
ttccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatctaagttgttaaaac |
120 |
Q |
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| T |
4004603 |
ttccatcttgcaatgccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcagggacaattttaagttgttaaaac |
4004702 |
T |
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| Q |
121 |
tca |
123 |
Q |
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| T |
4004703 |
tca |
4004705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 3951155 - 3951120
Alignment:
| Q |
281 |
aaatttgaaattgataagcagagtatttacagcata |
316 |
Q |
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| T |
3951155 |
aaatttgaaattgataagcagagtatttacagcata |
3951120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 3990178 - 3990244
Alignment:
| Q |
13 |
agcaacagttccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaat |
79 |
Q |
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| T |
3990178 |
agcaacaattccagctggaaatgccttacttccagaatccctgtattgtgtctgaggaaatgcaaat |
3990244 |
T |
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