View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4789-Insertion-13 (Length: 278)

Name: NF4789-Insertion-13
Description: NF4789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4789-Insertion-13
NF4789-Insertion-13
[»] chr4 (15 HSPs)
chr4 (149-266)||(46550706-46550823)
chr4 (149-256)||(17056615-17056722)
chr4 (149-263)||(47541809-47541925)
chr4 (149-256)||(41464802-41464911)
chr4 (149-256)||(52920087-52920197)
chr4 (156-251)||(15827131-15827229)
chr4 (149-247)||(47833504-47833603)
chr4 (67-117)||(46550626-46550676)
chr4 (149-257)||(36364868-36364972)
chr4 (149-256)||(39503504-39503615)
chr4 (149-256)||(20679841-20679951)
chr4 (159-244)||(46381481-46381568)
chr4 (71-117)||(47541735-47541781)
chr4 (73-115)||(47732466-47732508)
chr4 (149-221)||(42969971-42970043)
[»] chr1 (16 HSPs)
chr1 (149-256)||(16253029-16253136)
chr1 (149-256)||(24241478-24241585)
chr1 (149-256)||(41942781-41942888)
chr1 (149-256)||(21356794-21356901)
chr1 (149-256)||(34773420-34773528)
chr1 (149-256)||(39744169-39744276)
chr1 (158-262)||(38746028-38746133)
chr1 (149-256)||(2344969-2345077)
chr1 (178-256)||(48503922-48504000)
chr1 (64-117)||(24241614-24241667)
chr1 (71-115)||(34773345-34773389)
chr1 (154-256)||(7101359-7101464)
chr1 (73-114)||(38745959-38746000)
chr1 (73-113)||(8971569-8971609)
chr1 (73-117)||(41942916-41942960)
chr1 (73-117)||(16253166-16253210)
[»] chr3 (15 HSPs)
chr3 (149-256)||(44880254-44880361)
chr3 (149-260)||(1994850-1994961)
chr3 (149-256)||(22220210-22220318)
chr3 (149-255)||(2008400-2008508)
chr3 (149-261)||(22831174-22831286)
chr3 (149-256)||(39056875-39056981)
chr3 (73-117)||(25199079-25199123)
chr3 (180-256)||(26466362-26466438)
chr3 (73-116)||(22220346-22220389)
chr3 (72-116)||(2008537-2008581)
chr3 (74-114)||(22831103-22831143)
chr3 (149-236)||(28297695-28297782)
chr3 (67-117)||(45805449-45805499)
chr3 (199-256)||(45805583-45805640)
chr3 (72-117)||(1994780-1994825)
[»] chr7 (11 HSPs)
chr7 (149-260)||(8541427-8541539)
chr7 (149-256)||(34998528-34998637)
chr7 (149-256)||(10544991-10545100)
chr7 (177-256)||(39187986-39188065)
chr7 (149-256)||(45627414-45627524)
chr7 (199-251)||(32676800-32676852)
chr7 (210-266)||(15878797-15878853)
chr7 (71-117)||(8541565-8541611)
chr7 (73-117)||(30783412-30783456)
chr7 (73-117)||(34998665-34998709)
chr7 (149-208)||(40076693-40076753)
[»] chr8 (18 HSPs)
chr8 (149-260)||(42056676-42056787)
chr8 (72-268)||(30208187-30208380)
chr8 (161-260)||(39402038-39402140)
chr8 (149-261)||(5594779-5594891)
chr8 (149-255)||(1162117-1162222)
chr8 (149-256)||(40719895-40720005)
chr8 (149-261)||(35179155-35179268)
chr8 (149-259)||(31333162-31333273)
chr8 (149-238)||(42921385-42921474)
chr8 (74-114)||(5594922-5594962)
chr8 (149-212)||(30362018-30362082)
chr8 (156-256)||(36132676-36132776)
chr8 (73-117)||(39401955-39401999)
chr8 (73-117)||(40719821-40719865)
chr8 (71-117)||(1162043-1162089)
chr8 (73-117)||(34173559-34173603)
chr8 (73-117)||(34514581-34514625)
chr8 (70-117)||(35179296-35179341)
[»] chr5 (20 HSPs)
chr5 (149-256)||(33758794-33758901)
chr5 (155-237)||(23151436-23151518)
chr5 (149-261)||(2976446-2976556)
chr5 (149-247)||(34849451-34849550)
chr5 (149-246)||(30319817-30319915)
chr5 (149-256)||(20524604-20524711)
chr5 (149-256)||(10719746-10719854)
chr5 (149-236)||(37872201-37872291)
chr5 (219-259)||(37872302-37872342)
chr5 (151-263)||(8026460-8026577)
chr5 (149-248)||(3454259-3454358)
chr5 (72-115)||(36442660-36442703)
chr5 (149-207)||(42285218-42285277)
chr5 (73-117)||(10719883-10719927)
chr5 (70-117)||(3454387-3454434)
chr5 (71-117)||(16778273-16778319)
chr5 (74-116)||(21239003-21239045)
chr5 (73-114)||(20654461-20654502)
chr5 (73-117)||(23145929-23145973)
chr5 (73-117)||(37872129-37872173)
[»] chr2 (16 HSPs)
chr2 (149-256)||(3870024-3870135)
chr2 (149-256)||(11028779-11028887)
chr2 (163-256)||(36400857-36400952)
chr2 (149-262)||(28734070-28734183)
chr2 (149-256)||(37721449-37721557)
chr2 (149-256)||(38879517-38879625)
chr2 (149-256)||(3647418-3647526)
chr2 (73-117)||(3870164-3870208)
chr2 (149-255)||(30706149-30706258)
chr2 (73-117)||(34480055-34480099)
chr2 (149-256)||(6512079-6512191)
chr2 (73-116)||(36400993-36401036)
chr2 (149-210)||(3949317-3949378)
chr2 (73-117)||(30706078-30706122)
chr2 (72-117)||(37721585-37721630)
chr2 (73-117)||(9009119-9009163)
[»] scaffold0095 (2 HSPs)
scaffold0095 (161-260)||(35362-35464)
scaffold0095 (73-117)||(35503-35547)
[»] chr6 (4 HSPs)
chr6 (149-256)||(2141240-2141348)
chr6 (149-261)||(7080148-7080262)
chr6 (162-256)||(25336928-25337023)
chr6 (75-115)||(17852650-17852690)
[»] scaffold0288 (2 HSPs)
scaffold0288 (177-256)||(18084-18163)
scaffold0288 (73-117)||(17977-18022)
[»] scaffold0009 (1 HSPs)
scaffold0009 (177-264)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (149-256)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  249 gaagaatatctccttatt 266  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 47541809 - 47541925
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| ||    
T  47541809 aataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatca 47541908  T
Q  247 tggaagaatatctcctt 263  Q
    || ||||||||||||||    
T  47541909 tgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  247 tggaagaata 256  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  149 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 245  Q
    |||||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  246 atggaagaata 256  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  156 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 251  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 46550626 - 46550676
Alignment:
Q  67 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  46550626 ttctaagagaaattctaatatggtcacaagaccaaagaaaaagtgtttggt 46550676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  249 gaagaatat 257  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 39503504 - 39503615
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatga--ttgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgac 244  Q
    ||||||||||||||||||||||||||  |  |  || |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  39503504 aataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgac 39503603  T
Q  245 catggaagaata 256  Q
    ||| ||||||||    
T  39503604 catagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 245  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  246 atggaagaata 256  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  159 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 244  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 47541735 - 47541781
Alignment:
Q  71 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||    
T  47541735 atgagaaattctaatatggtcacgagatcaaagaaaaagtgtttggt 47541781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 47732508 - 47732466
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 115  Q
    |||||||| |||||||||||||||| |||||||||| ||||||    
T  47732508 gagaaattctaatatggtcacaggatcaaagaaaaattgtttg 47732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 221  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  249 gaagaata 256  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  249 gaagaata 256  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  249 gaagaata 256  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  249 gaagaata 256  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 34773420 - 34773528
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||| |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||    
T  34773420 aataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatca 34773518  T
Q  247 tggaagaata 256  Q
    ||||||||||    
T  34773519 tggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  249 gaagaata 256  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  158 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  257 tctcct 262  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 246  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  247 tggaagaata 256  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  178 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 24241667 - 24241614
Alignment:
Q  64 ttattctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||    
T  24241667 ttattataagagaaattctaatatggtcacaggaccaaagaaaaagtatttggt 24241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 34773345 - 34773389
Alignment:
Q  71 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 115  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  34773345 atgagaaattctaatatggttacaggaccaaagaaaaagtgtttg 34773389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  154 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 249  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  250 aagaata 256  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 38745959 - 38746000
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 114  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38745959 gagaaattttaatatggtcacacggccaaagaaaaagtgttt 38746000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 8971609 - 8971569
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtt 113  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  8971609 gagaaattctaatatggtcacaggaccaaaaaaaaagtgtt 8971569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 41942960 - 41942916
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  41942960 gagaaattctaatatggtcacacgaccaaagataaagtgtttggt 41942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 16253210 - 16253166
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||    
T  16253210 gagaaattctaatatgatcacatgatcaaagaaaaagtgtttggt 16253166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  249 gaagaata 256  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  249 gaagaatatctc 260  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 246  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  247 tggaagaat 255  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  249 gaagaatatctcc 261  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  249 gaagaata 256  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 25199123 - 25199079
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  25199123 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 25199079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  180 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 22220389 - 22220346
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  22220389 gagaaattttaatatggtcacaggaccaaagaaaaagtatttgg 22220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 2008581 - 2008537
Alignment:
Q  72 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 116  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008581 tgagaaattctaatatggtcacaggaccaaagaaatagtgtttgg 2008537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 22831103 - 22831143
Alignment:
Q  74 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 114  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  22831103 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 22831143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 236  Q
    |||||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 45805449 - 45805499
Alignment:
Q  67 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  45805449 ttctctgagaaattctaatatggtcacatgaccaaataaaaagtgtttggt 45805499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  199 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 1994780 - 1994825
Alignment:
Q  72 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  1994780 tgagaaattctaatatggtcacatgaccaaagaaatagtatttggt 1994825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  149 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  248 ggaagaatatctc 260  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 246  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  247 tggaagaata 256  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  149 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  247 tggaagaata 256  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  177 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 245  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  246 atggaagaata 256  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  199 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 251  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  210 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 266  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 8541611 - 8541565
Alignment:
Q  71 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||||||||||||| | |||| |||||||| ||||||||||    
T  8541611 atgagaaattttaatatggttataggatcaaagaaatagtgtttggt 8541565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 30783412 - 30783456
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  30783412 gagaaattctaaaatggtcacatgaccaaataaaaagtgtttggt 30783456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 34998709 - 34998665
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||| || |||||||||||| ||||||    
T  34998709 gagaaattctaatatggtcacatgatcaaagaaaaagtatttggt 34998665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 40076693 - 40076753
Alignment:
Q  149 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttat 208  Q
    |||||||| |||||||||||| ||||| |||||||||||||||  |  |||||||||||||    
T  40076693 aataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  249 gaagaatatctc 260  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 72 - 268
Target Start/End: Complemental strand, 30208380 - 30208187
Alignment:
Q  72 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggtnnnnnnnnnnnnnntaaagaagtannnnnnnaataataaagaggaaattgataa 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||              |||||||||        |||||||| ||||||||||||||    
T  30208380 tgagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacaca----taaagaagtgtttttttaataataaggaggaaattgataa 30208285  T
Q  172 aaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttattct 268  Q
    ||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  30208284 aaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  161 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 257  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  258 ctc 260  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  249 gaagaatatctcc 261  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  249 gaagaat 255  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 245  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  246 atggaagaata 256  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 35179268 - 35179155
Alignment:
Q  149 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    ||||||||  ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  35179268 aataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccat 35179169  T
Q  248 ggaagaatatctcc 261  Q
    | ||||||| ||||    
T  35179168 gaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 246  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  247 tggaagaatatct 259  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 238  Q
    |||||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 5594962 - 5594922
Alignment:
Q  74 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 114  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  5594962 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 5594922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  149 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 212  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  156 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 255  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  256 a 256  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 39401955 - 39401999
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  39401955 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 39401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 40719821 - 40719865
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| |||||||||| || ||||||||||||||||||||||    
T  40719821 gagaaattctaatatggtcgcatgaccaaagaaaaagtgtttggt 40719865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 1162043 - 1162089
Alignment:
Q  71 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  1162043 atgagaaattcttatatggtcataggactaaagaaaaagtgtttggt 1162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 34173603 - 34173559
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  34173603 gagaaattttaacatggtcacaagactaaacaaaaagtgtttggt 34173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 34514625 - 34514581
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  34514625 gagaaattttaatatagtcacaagaccaaacaaatagtgtttggt 34514581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 35179341 - 35179296
Alignment:
Q  70 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||| |||||||||||  ||| |||||||||||||||||||    
T  35179341 tatgagaaattctaatatggtca--ggatcaaagaaaaagtgtttggt 35179296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  249 gaagaata 256  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  155 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 237  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  249 gaagaatatctcc 261  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 246  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  249 gaagaata 256  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 10719854 - 10719746
Alignment:
Q  149 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||| ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||    
T  10719854 aatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccat 10719755  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  10719754 ggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 236  Q
    |||||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  219 aaacattattgatttggtcttgtgaccatggaagaatatct 259  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  151 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 245  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  246 atggaagaatatctcctt 263  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 248  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 36442703 - 36442660
Alignment:
Q  72 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 115  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  36442703 tgagaaattttaatatggtcacatgaccaaataaaaagtgtttg 36442660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  149 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 207  Q
    |||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 10719927 - 10719883
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||    
T  10719927 gagaaattttattatggtcacatgaccaaataaaaagtgtttggt 10719883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 3454434 - 3454387
Alignment:
Q  70 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  3454434 tatgagaaattttaatatggtcacatgatcaaggaaaaagtatttggt 3454387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 16778319 - 16778273
Alignment:
Q  71 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||| |||||||| |||||||||||| |||||||| |||||    
T  16778319 atgagaaattctaatatggccacaggaccaaataaaaagtgcttggt 16778273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 21239003 - 21239045
Alignment:
Q  74 agaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 116  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||    
T  21239003 agaaattctaatatggtcacaagaccaaacaaaaagtgtttgg 21239045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 20654461 - 20654502
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 114  Q
    |||||||| ||||||||||||| ||||||| |||||||||||    
T  20654461 gagaaattctaatatggtcacatgaccaaataaaaagtgttt 20654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 23145929 - 23145973
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23145929 gagaaattctaatatggtcataggatcaaagaaaaagtatttggt 23145973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 37872129 - 37872173
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||||    
T  37872129 gagaaattctaatatgatcagaggaccaaagaaaaagtatttggt 37872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 244  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  245 catggaagaata 256  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  163 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  248 ggaagaatatctcct 262  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  149 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactat 38879526  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  38879525 ggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 246  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  247 tggaagaata 256  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 3870208 - 3870164
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  3870208 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 3870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  149 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 243  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  244 ccatggaagaat 255  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 34480055 - 34480099
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  34480055 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 34480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 6512079 - 6512191
Alignment:
Q  149 aataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtg 242  Q
    ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtg 6512177  T
Q  243 accatggaagaata 256  Q
    ||||||||| ||||    
T  6512178 accatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 36401036 - 36400993
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 116  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  36401036 gagaaattctaatatggtcacaggactaaagaaaaagtgtttgg 36400993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 3949317 - 3949378
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 210  Q
    ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949317 aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 30706078 - 30706122
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||||||||||||||||| || |||| ||||||||||||||    
T  30706078 gagaaattttaatatggtcacatgatcaaataaaaagtgtttggt 30706122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 37721630 - 37721585
Alignment:
Q  72 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  37721630 tgagaaattctaatatggtcacgagactaaagaaaaagtgtttggt 37721585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 9009163 - 9009119
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    |||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  9009163 gagaaattctaatatggtcacaagaccaaacaaatagtgtttggt 9009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  161 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 257  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  258 ctc 260  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 35547 - 35503
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 117  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  35547 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 35503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  149 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 247  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  248 ggaagaata 256  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 7080262 - 7080148
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 246  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgacca 7080163  T
Q  247 tggaagaatatctcc 261  Q
    | |||||||| ||||    
T  7080162 tagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 256
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  162 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 17852650 - 17852690
Alignment:
Q  75 gaaattttaatatggtcacaggaccaaagaaaaagtgtttg 115  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  17852650 gaaattttaatatggtcacagaacgaaagaaaaagtgtttg 17852690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  177 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 256  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 17977 - 18022
Alignment:
Q  73 gagaaattttaatatggtcacaggaccaaag-aaaaagtgtttggt 117  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||    
T  17977 gagaaattctaatatggtcacgggaccaaagaaaaaagtgtttggt 18022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  177 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 264  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

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Target: scaffold1339 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 57 - 165
Alignment:
Q  149 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 246  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  247 tggaagaata 256  Q
    ||||||||||    
T  156 tggaagaata 165  T

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